From 037b60120bc21e17c2815eea86ea53e5e755090f Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Sat, 31 Jul 2021 11:59:24 +0000
Subject: [PATCH] Change fasqtCountError to be false too
---
rna-seq.nf | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/rna-seq.nf b/rna-seq.nf
index 9b851ec..79a3251 100644
--- a/rna-seq.nf
+++ b/rna-seq.nf
@@ -439,8 +439,9 @@ process parseMetadata {
fastqReadError_details="**Number of reads do not match for R1 and R2:** there may be a trunkation or mismatch of fastq files"
fi
fi
- if [ "${params.endsForce}" -ne "" ]
+ if [ "${params.endsForce}" != "" ]
then
+ fastqCountError=false
fastqReadError=false
fastqReadError_details=""
fi
--
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