From 02d4766edff5e51de4a849495df1e557b7ae286b Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 5 Jan 2021 17:29:37 -0600
Subject: [PATCH] Alow 1 retry of getData and trimData
---
workflow/conf/biohpc.config | 4 ++++
1 file changed, 4 insertions(+)
diff --git a/workflow/conf/biohpc.config b/workflow/conf/biohpc.config
index 82ee0f3..ae32988 100755
--- a/workflow/conf/biohpc.config
+++ b/workflow/conf/biohpc.config
@@ -15,12 +15,16 @@ process {
}
withName:getData {
queue = 'super'
+ errorStrategy = 'retry'
+ maxRetries = 1
}
withName:parseMetadata {
executor = 'local'
}
withName:trimData {
queue = 'super'
+ errorStrategy = 'retry'
+ maxRetries = 1
}
withName:getRefInfer {
queue = 'super'
--
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