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GUDMAP_RBK
data_hub_scripts
Commits
a43a1c03
Commit
a43a1c03
authored
Feb 01, 2021
by
Venkat Malladi
Browse files
Fix merge.
parents
141c021e
2bb22696
Changes
1
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Inline
Side-by-side
scripts/split_study.sh
View file @
a43a1c03
...
@@ -42,7 +42,7 @@ main(){
...
@@ -42,7 +42,7 @@ main(){
fi
fi
# query GUDMAP/RBK study RID for experiment RIDs
# query GUDMAP/RBK study RID for experiment RIDs
echo
"curl --location --request GET 'https://dev.gudmap.org/ermrest/catalog/2/entity/RNASeq:Experiment/
Sequencing
_Type=mRNA-Seq/Study_RID="
${
rid
}
"'"
| bash
>
${
rid
}
\_
experimentRIDs.json
echo
"curl --location --request GET 'https://dev.gudmap.org/ermrest/catalog/2/entity/RNASeq:Experiment/
Experiment
_Type=mRNA-Seq/Study_RID="
${
rid
}
"'"
| bash
>
${
rid
}
\_
experimentRIDs.json
# extract experiment RIDs
# extract experiment RIDs
>
${
rid
}
\_
experimentRIDs.csv
>
${
rid
}
\_
experimentRIDs.csv
python3 ./scripts/extract_RIDs.py
-f
${
rid
}
\_
experimentRIDs
python3 ./scripts/extract_RIDs.py
-f
${
rid
}
\_
experimentRIDs
...
...
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