Commit 2bb22696 authored by Gervaise Henry's avatar Gervaise Henry 🤠
Browse files

Change seq type to exp type to match database col name change

parent 109bf9a2
...@@ -42,7 +42,7 @@ main(){ ...@@ -42,7 +42,7 @@ main(){
fi fi
# query GUDMAP/RBK study RID for experiment RIDs # query GUDMAP/RBK study RID for experiment RIDs
echo "curl --location --request GET 'https://dev.gudmap.org/ermrest/catalog/2/entity/RNASeq:Experiment/Sequencing_Type=mRNA-Seq/Study_RID="${rid}"'" | bash > ${rid}\_experimentRIDs.json echo "curl --location --request GET 'https://dev.gudmap.org/ermrest/catalog/2/entity/RNASeq:Experiment/Experiment_Type=mRNA-Seq/Study_RID="${rid}"'" | bash > ${rid}\_experimentRIDs.json
# extract experiment RIDs # extract experiment RIDs
>${rid}\_experimentRIDs.csv >${rid}\_experimentRIDs.csv
python3 ./scripts/extract_RIDs.py -f ${rid}\_experimentRIDs python3 ./scripts/extract_RIDs.py -f ${rid}\_experimentRIDs
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