Commit 109bf9a2 authored by Gervaise Henry's avatar Gervaise Henry 🤠
Browse files

Change server query to dev

parent 80c522ff
...@@ -42,7 +42,7 @@ main(){ ...@@ -42,7 +42,7 @@ main(){
fi fi
# query GUDMAP/RBK study RID for experiment RIDs # query GUDMAP/RBK study RID for experiment RIDs
echo "curl --location --request GET 'https://www.gudmap.org/ermrest/catalog/2/entity/RNASeq:Experiment/Sequencing_Type=mRNA-Seq/Study_RID="${rid}"'" | bash > ${rid}\_experimentRIDs.json echo "curl --location --request GET 'https://dev.gudmap.org/ermrest/catalog/2/entity/RNASeq:Experiment/Sequencing_Type=mRNA-Seq/Study_RID="${rid}"'" | bash > ${rid}\_experimentRIDs.json
# extract experiment RIDs # extract experiment RIDs
>${rid}\_experimentRIDs.csv >${rid}\_experimentRIDs.csv
python3 ./scripts/extract_RIDs.py -f ${rid}\_experimentRIDs python3 ./scripts/extract_RIDs.py -f ${rid}\_experimentRIDs
...@@ -53,7 +53,7 @@ main(){ ...@@ -53,7 +53,7 @@ main(){
do do
# query GUDMAP/RBK experiment RIDs for replicate RIDs # query GUDMAP/RBK experiment RIDs for replicate RIDs
> temp\_${expRID}\_repRIDs.json > temp\_${expRID}\_repRIDs.json
echo "curl --location --request GET 'https://www.gudmap.org/ermrest/catalog/2/entity/RNASeq:Replicate/Experiment_RID="${expRID}"'" | bash >> temp\_${expRID}\_repRIDs.json echo "curl --location --request GET 'https://dev.gudmap.org/ermrest/catalog/2/entity/RNASeq:Replicate/Experiment_RID="${expRID}"'" | bash >> temp\_${expRID}\_repRIDs.json
# extract replicate RIDs # extract replicate RIDs
> temp\_${expRID}\_repRIDs.csv > temp\_${expRID}\_repRIDs.csv
python3 ./scripts/extract_RIDs.py -f temp\_${expRID}\_repRIDs python3 ./scripts/extract_RIDs.py -f temp\_${expRID}\_repRIDs
......
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