Issues · Strand Lab

Make bash.scripts take project from command line and pass to Rscript opt

sc-TissueMapper_Pr#8 · opened Mar 29, 2018 by Gervaise Henry Enhancement
- CLOSED
- 0
updated Aug 13, 2019
Make unique names for QC plots

sc-TissueMapper_Pr#20 · opened Jun 17, 2018 by Gervaise Henry BUG
- CLOSED
- 0
updated Aug 13, 2019
Add Surface/Nucleus predictor

sc-TissueMapper_Pr#21 · opened Jun 20, 2018 by Gervaise Henry Enhancement
- CLOSED
- 0
updated Aug 13, 2019
Test clusterProfiler in lieu of QuSAGE

sc-TissueMapper_Pr#15 · opened Apr 10, 2018 by Gervaise Henry Test
- CLOSED
- 0
updated Aug 13, 2019
Pd DEG not have all OE pops in comparisons!

sc-TissueMapper_Pr#23 · opened Nov 02, 2018 by Gervaise Henry Nov 5, 2018 BUG
- CLOSED
- 0
updated Nov 03, 2018
Remove depreciated scripts

sc-TissueMapper_Pr#22 · opened Jun 20, 2018 by Gervaise Henry Enhancement
- CLOSED
- 0
updated Oct 01, 2018
Fix CCA VlnPlot

sc-TissueMapper_Pr#19 · opened Jun 17, 2018 by Gervaise Henry BUG
- CLOSED
- 0
updated Jun 18, 2018
Prevent error if NE fail because no NE

sc-TissueMapper_Pr#3 · opened Mar 27, 2018 by Gervaise Henry
- CLOSED
- 0
updated Jun 17, 2018
Fix OE1/2 order in dot plot on sc_DEG.R

sc-TissueMapper_Pr#6 · opened Mar 28, 2018 by Gervaise Henry
- CLOSED
- 0
updated Jun 17, 2018
Change r.scripts to functions

sc-TissueMapper_Pr#9 · opened Mar 29, 2018 by Gervaise Henry
- CLOSED
- 0
updated Jun 11, 2018
Integrate Jackstraw with multi-core parallel processing

sc-TissueMapper_Pr#17 · opened Apr 12, 2018 by Gervaise Henry
- CLOSED
- 0
updated Jun 11, 2018
Alter PCA cutoff

sc-TissueMapper_Pr#18 · opened May 14, 2018 by Gervaise Henry
- CLOSED
- 0
updated Jun 11, 2018
Fix NE display

sc-TissueMapper_Pr#5 · opened Mar 28, 2018 by Gervaise Henry
- CLOSED
- 0
updated May 14, 2018
Integrate new suggested technique for large data handling from seurat

sc-TissueMapper_Pr#11 · opened Apr 06, 2018 by Gervaise Henry
- CLOSED
- 2
updated Apr 16, 2018
Fix QuSAGE tSNE ouput filenames

sc-TissueMapper_Pr#16 · opened Apr 10, 2018 by Gervaise Henry
- CLOSED
- 0
updated Apr 12, 2018
Reintegrate nuclear/surface marker prediction into DEG generation

sc-TissueMapper_Pr#14 · opened Apr 09, 2018 by Gervaise Henry
- CLOSED
- 0
updated Apr 09, 2018
Prevent error if anchor gene doesn't exist in data

sc-TissueMapper_Pr#2 · opened Mar 27, 2018 by Gervaise Henry
- CLOSED
- 0
updated Apr 09, 2018
Allow DEG and Table scripts to run without NE ID

sc-TissueMapper_Pr#4 · opened Mar 27, 2018 by Gervaise Henry
- CLOSED
- 0
updated Apr 09, 2018
LineageSubClust (Epi+St) res tSNE's put in global directory when NoStress analysis selected

sc-TissueMapper_Pr#12 · opened Apr 08, 2018 by Gervaise Henry
- CLOSED
- 0
updated Apr 09, 2018
Allow Epi/St SubClust Merge to have different resolutions

sc-TissueMapper_Pr#13 · opened Apr 08, 2018 by Gervaise Henry
- CLOSED
- 0
updated Apr 09, 2018