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Strand Lab
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  • Strand Lab
  • Issues

  • Open 0
  • Closed 23
  • All 23
  • Priority Created date Last updated Milestone due date Due date Popularity Label priority Manual Weight Blocking
  • Make bash.scripts take project from command line and pass to Rscript opt
    sc-TissueMapper_Pr#8 · opened Mar 29, 2018 by Gervaise Henry   Enhancement
    • CLOSED
    • 0
    updated Aug 13, 2019
  • Make unique names for QC plots
    sc-TissueMapper_Pr#20 · opened Jun 17, 2018 by Gervaise Henry   BUG
    • CLOSED
    • 0
    updated Aug 13, 2019
  • Add Surface/Nucleus predictor
    sc-TissueMapper_Pr#21 · opened Jun 20, 2018 by Gervaise Henry   Enhancement
    • CLOSED
    • 0
    updated Aug 13, 2019
  • Test clusterProfiler in lieu of QuSAGE
    sc-TissueMapper_Pr#15 · opened Apr 10, 2018 by Gervaise Henry   Test
    • CLOSED
    • 0
    updated Aug 13, 2019
  • Pd DEG not have all OE pops in comparisons!
    sc-TissueMapper_Pr#23 · opened Nov 02, 2018 by Gervaise Henry   Nov 5, 2018   BUG
    • CLOSED
    • 0
    updated Nov 03, 2018
  • Remove depreciated scripts
    sc-TissueMapper_Pr#22 · opened Jun 20, 2018 by Gervaise Henry   Enhancement
    • CLOSED
    • 0
    updated Oct 01, 2018
  • Fix CCA VlnPlot
    sc-TissueMapper_Pr#19 · opened Jun 17, 2018 by Gervaise Henry   BUG
    • CLOSED
    • 0
    updated Jun 18, 2018
  • Prevent error if NE fail because no NE
    sc-TissueMapper_Pr#3 · opened Mar 27, 2018 by Gervaise Henry
    • CLOSED
    • 0
    updated Jun 17, 2018
  • Fix OE1/2 order in dot plot on sc_DEG.R
    sc-TissueMapper_Pr#6 · opened Mar 28, 2018 by Gervaise Henry
    • CLOSED
    • 0
    updated Jun 17, 2018
  • Change r.scripts to functions
    sc-TissueMapper_Pr#9 · opened Mar 29, 2018 by Gervaise Henry
    • CLOSED
    • 0
    updated Jun 11, 2018
  • Integrate Jackstraw with multi-core parallel processing
    sc-TissueMapper_Pr#17 · opened Apr 12, 2018 by Gervaise Henry
    • CLOSED
    • 0
    updated Jun 11, 2018
  • Alter PCA cutoff
    sc-TissueMapper_Pr#18 · opened May 14, 2018 by Gervaise Henry
    • CLOSED
    • 0
    updated Jun 11, 2018
  • Fix NE display
    sc-TissueMapper_Pr#5 · opened Mar 28, 2018 by Gervaise Henry
    • CLOSED
    • 0
    updated May 14, 2018
  • Integrate new suggested technique for large data handling from seurat
    sc-TissueMapper_Pr#11 · opened Apr 06, 2018 by Gervaise Henry
    • CLOSED
    • 2
    updated Apr 16, 2018
  • Fix QuSAGE tSNE ouput filenames
    sc-TissueMapper_Pr#16 · opened Apr 10, 2018 by Gervaise Henry
    • CLOSED
    • 0
    updated Apr 12, 2018
  • Reintegrate nuclear/surface marker prediction into DEG generation
    sc-TissueMapper_Pr#14 · opened Apr 09, 2018 by Gervaise Henry
    • CLOSED
    • 0
    updated Apr 09, 2018
  • Prevent error if anchor gene doesn't exist in data
    sc-TissueMapper_Pr#2 · opened Mar 27, 2018 by Gervaise Henry
    • CLOSED
    • 0
    updated Apr 09, 2018
  • Allow DEG and Table scripts to run without NE ID
    sc-TissueMapper_Pr#4 · opened Mar 27, 2018 by Gervaise Henry
    • CLOSED
    • 0
    updated Apr 09, 2018
  • LineageSubClust (Epi+St) res tSNE's put in global directory when NoStress analysis selected
    sc-TissueMapper_Pr#12 · opened Apr 08, 2018 by Gervaise Henry
    • CLOSED
    • 0
    updated Apr 09, 2018
  • Allow Epi/St SubClust Merge to have different resolutions
    sc-TissueMapper_Pr#13 · opened Apr 08, 2018 by Gervaise Henry
    • CLOSED
    • 0
    updated Apr 09, 2018
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