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Strand Lab
Issues

Open 0
Closed 29
All 29

Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking

Add opt for no dowsampling in sc_PC.Score.Stress.R

sc-TissueMapper_Pr#1 · created Mar 27, 2018 by Gervaise Henry
- CLOSED
- 0
updated Mar 27, 2018
Prevent error if anchor gene doesn't exist in data

sc-TissueMapper_Pr#2 · created Mar 27, 2018 by Gervaise Henry
- CLOSED
- 0
updated Apr 09, 2018
Prevent error if NE fail because no NE

sc-TissueMapper_Pr#3 · created Mar 27, 2018 by Gervaise Henry
- CLOSED
- 0
updated Jun 17, 2018
Allow DEG and Table scripts to run without NE ID

sc-TissueMapper_Pr#4 · created Mar 27, 2018 by Gervaise Henry
- CLOSED
- 0
updated Apr 09, 2018
Fix NE display

sc-TissueMapper_Pr#5 · created Mar 28, 2018 by Gervaise Henry
- CLOSED
- 0
updated May 14, 2018
Fix OE1/2 order in dot plot on sc_DEG.R

sc-TissueMapper_Pr#6 · created Mar 28, 2018 by Gervaise Henry
- CLOSED
- 0
updated Jun 17, 2018
Add code to reorder cells in tSNE (especially in NE)

sc-TissueMapper_Pr#7 · created Mar 28, 2018 by Gervaise Henry
- CLOSED
- 1
updated Apr 09, 2018
Make bash.scripts take project from command line and pass to Rscript opt

sc-TissueMapper_Pr#8 · created Mar 29, 2018 by Gervaise Henry Enhancement
- CLOSED
- 0
updated Aug 13, 2019
Change r.scripts to functions

sc-TissueMapper_Pr#9 · created Mar 29, 2018 by Gervaise Henry
- CLOSED
- 0
updated Jun 11, 2018
Recreate CI TestData Create r.script

sc-TissueMapper_Pr#10 · created Mar 29, 2018 by Gervaise Henry
- CLOSED
- 0
updated Mar 30, 2018
Integrate new suggested technique for large data handling from seurat

sc-TissueMapper_Pr#11 · created Apr 06, 2018 by Gervaise Henry
- CLOSED
- 2
updated Apr 16, 2018
LineageSubClust (Epi+St) res tSNE's put in global directory when NoStress analysis selected

sc-TissueMapper_Pr#12 · created Apr 08, 2018 by Gervaise Henry
- CLOSED
- 0
updated Apr 09, 2018
Allow Epi/St SubClust Merge to have different resolutions

sc-TissueMapper_Pr#13 · created Apr 08, 2018 by Gervaise Henry
- CLOSED
- 0
updated Apr 09, 2018
Reintegrate nuclear/surface marker prediction into DEG generation

sc-TissueMapper_Pr#14 · created Apr 09, 2018 by Gervaise Henry
- CLOSED
- 0
updated Apr 09, 2018
Test clusterProfiler in lieu of QuSAGE

sc-TissueMapper_Pr#15 · created Apr 10, 2018 by Gervaise Henry Test
- CLOSED
- 0
updated Aug 13, 2019
Fix QuSAGE tSNE ouput filenames

sc-TissueMapper_Pr#16 · created Apr 10, 2018 by Gervaise Henry
- CLOSED
- 0
updated Apr 12, 2018
Integrate Jackstraw with multi-core parallel processing

sc-TissueMapper_Pr#17 · created Apr 12, 2018 by Gervaise Henry
- CLOSED
- 0
updated Jun 11, 2018
Alter PCA cutoff

sc-TissueMapper_Pr#18 · created May 14, 2018 by Gervaise Henry
- CLOSED
- 0
updated Jun 11, 2018
Fix CCA VlnPlot

sc-TissueMapper_Pr#19 · created Jun 17, 2018 by Gervaise Henry BUG
- CLOSED
- 0
updated Jun 18, 2018
Make unique names for QC plots

sc-TissueMapper_Pr#20 · created Jun 17, 2018 by Gervaise Henry BUG
- CLOSED
- 0
updated Aug 13, 2019

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