Strand Lab issueshttps://git.biohpc.swmed.edu/groups/StrandLab/-/issues2020-02-23T15:06:14-06:00https://git.biohpc.swmed.edu/StrandLab/StrandLab2.net/-/issues/3Add PdPgb data2020-02-23T15:06:14-06:00Gervaise Henrygervaise.henry@utsouthwestern.eduAdd PdPgb dataGroup includes disease
Split includes diseaseGroup includes disease
Split includes disease1.2.0Gervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/StrandLab2.net/-/issues/4Add muPrUr data2020-02-22T20:09:16-06:00Gervaise Henrygervaise.henry@utsouthwestern.eduAdd muPrUr dataGroup includes organ
Split includes organGroup includes organ
Split includes organ1.2.0Gervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/StrandLab2.net/-/issues/6Add Alicia ORCID2020-02-19T16:28:38-06:00Gervaise Henrygervaise.henry@utsouthwestern.eduAdd Alicia ORCID0000-0002-1966-60350000-0002-1966-60351.1.1Gervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/StrandLab2.net/-/issues/5Shrink the size of the data group dropdowns2020-02-19T16:28:38-06:00Gervaise Henrygervaise.henry@utsouthwestern.eduShrink the size of the data group dropdowns1.1.1Gervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/StrandLab2.net/-/issues/2Fix blank gene run dialog2020-02-19T16:28:38-06:00Gervaise Henrygervaise.henry@utsouthwestern.eduFix blank gene run dialog1.1.1Gervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/StrandLab2.net/-/issues/1Add lineage option to scData2020-01-21T20:16:25-06:00Gervaise Henrygervaise.henry@utsouthwestern.eduAdd lineage option to scData1.1.0Gervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/8Make bash.scripts take project from command line and pass to Rscript opt2019-08-13T00:06:56-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduMake bash.scripts take project from command line and pass to Rscript opt"$1""$1"Gervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/20Make unique names for QC plots2019-08-13T00:06:49-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduMake unique names for QC plotsIn multiple dataset loadIn multiple dataset loadGervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/21Add Surface/Nucleus predictor2019-08-13T00:06:41-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduAdd Surface/Nucleus predictorGervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/15Test clusterProfiler in lieu of QuSAGE2019-08-13T00:05:22-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduTest clusterProfiler in lieu of QuSAGEGervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/23Pd DEG not have all OE pops in comparisons!2018-11-03T01:07:25-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduPd DEG not have all OE pops in comparisons!Gervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.edu2018-11-05https://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/22Remove depreciated scripts2018-10-01T13:36:20-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduRemove depreciated scriptsGervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/19Fix CCA VlnPlot2018-06-18T08:10:24-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduFix CCA VlnPlotChange to:
plot <- VlnPlot...
plot(plot)Change to:
plot <- VlnPlot...
plot(plot)Gervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/3Prevent error if NE fail because no NE2018-06-17T17:41:14-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduPrevent error if NE fail because no NEIn case where no NE, NE detection will assign large pop incorrectly and eventually cause an errorIn case where no NE, NE detection will assign large pop incorrectly and eventually cause an errorGervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/6Fix OE1/2 order in dot plot on sc_DEG.R2018-06-17T17:41:05-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduFix OE1/2 order in dot plot on sc_DEG.RAgain?Again?Gervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/9Change r.scripts to functions2018-06-11T16:35:23-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduChange r.scripts to functionsGervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/17Integrate Jackstraw with multi-core parallel processing2018-06-11T16:35:11-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduIntegrate Jackstraw with multi-core parallel processingGervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/18Alter PCA cutoff2018-06-11T16:34:55-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduAlter PCA cutoffUse lowest local minima AFTER the global maximaUse lowest local minima AFTER the global maximaGervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/5Fix NE display2018-05-14T09:11:46-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduFix NE displayPC1 (NE Score) polarity
PCS_NE.Epi.Group.eps NE incorrectly labeledPC1 (NE Score) polarity
PCS_NE.Epi.Group.eps NE incorrectly labeledGervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/11Integrate new suggested technique for large data handling from seurat2018-04-16T10:28:11-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduIntegrate new suggested technique for large data handling from seuratGervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.edu