Strand Lab issueshttps://git.biohpc.swmed.edu/groups/StrandLab/-/issues2020-02-19T16:28:38-06:00https://git.biohpc.swmed.edu/StrandLab/StrandLab2.net/-/issues/6Add Alicia ORCID2020-02-19T16:28:38-06:00Gervaise Henrygervaise.henry@utsouthwestern.eduAdd Alicia ORCID0000-0002-1966-60350000-0002-1966-60351.1.1Gervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/StrandLab2.net/-/issues/5Shrink the size of the data group dropdowns2020-02-19T16:28:38-06:00Gervaise Henrygervaise.henry@utsouthwestern.eduShrink the size of the data group dropdowns1.1.1Gervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/StrandLab2.net/-/issues/4Add muPrUr data2020-02-22T20:09:16-06:00Gervaise Henrygervaise.henry@utsouthwestern.eduAdd muPrUr dataGroup includes organ
Split includes organGroup includes organ
Split includes organ1.2.0Gervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/StrandLab2.net/-/issues/3Add PdPgb data2020-02-23T15:06:14-06:00Gervaise Henrygervaise.henry@utsouthwestern.eduAdd PdPgb dataGroup includes disease
Split includes diseaseGroup includes disease
Split includes disease1.2.0Gervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/StrandLab2.net/-/issues/2Fix blank gene run dialog2020-02-19T16:28:38-06:00Gervaise Henrygervaise.henry@utsouthwestern.eduFix blank gene run dialog1.1.1Gervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/StrandLab2.net/-/issues/1Add lineage option to scData2020-01-21T20:16:25-06:00Gervaise Henrygervaise.henry@utsouthwestern.eduAdd lineage option to scData1.1.0Gervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/23Pd DEG not have all OE pops in comparisons!2018-11-03T01:07:25-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduPd DEG not have all OE pops in comparisons!Gervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.edu2018-11-05https://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/22Remove depreciated scripts2018-10-01T13:36:20-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduRemove depreciated scriptsGervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/21Add Surface/Nucleus predictor2019-08-13T00:06:41-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduAdd Surface/Nucleus predictorGervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/20Make unique names for QC plots2019-08-13T00:06:49-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduMake unique names for QC plotsIn multiple dataset loadIn multiple dataset loadGervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/19Fix CCA VlnPlot2018-06-18T08:10:24-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduFix CCA VlnPlotChange to:
plot <- VlnPlot...
plot(plot)Change to:
plot <- VlnPlot...
plot(plot)Gervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/18Alter PCA cutoff2018-06-11T16:34:55-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduAlter PCA cutoffUse lowest local minima AFTER the global maximaUse lowest local minima AFTER the global maximaGervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/17Integrate Jackstraw with multi-core parallel processing2018-06-11T16:35:11-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduIntegrate Jackstraw with multi-core parallel processingGervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/16Fix QuSAGE tSNE ouput filenames2018-04-12T14:33:44-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduFix QuSAGE tSNE ouput filenamesEpi overwrite subpop ?
St name merge pop "SubPop" ?Epi overwrite subpop ?
St name merge pop "SubPop" ?Gervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/15Test clusterProfiler in lieu of QuSAGE2019-08-13T00:05:22-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduTest clusterProfiler in lieu of QuSAGEGervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/14Reintegrate nuclear/surface marker prediction into DEG generation2018-04-09T20:01:29-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduReintegrate nuclear/surface marker prediction into DEG generationGervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/13Allow Epi/St SubClust Merge to have different resolutions2018-04-09T12:53:23-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduAllow Epi/St SubClust Merge to have different resolutionsGervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/12LineageSubClust (Epi+St) res tSNE's put in global directory when NoStress ana...2018-04-09T12:59:00-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduLineageSubClust (Epi+St) res tSNE's put in global directory when NoStress analysis selectedGervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/11Integrate new suggested technique for large data handling from seurat2018-04-16T10:28:11-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduIntegrate new suggested technique for large data handling from seuratGervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.eduhttps://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/-/issues/10Recreate CI TestData Create r.script2018-03-30T00:51:31-05:00Gervaise Henrygervaise.henry@utsouthwestern.eduRecreate CI TestData Create r.scriptGervaise Henrygervaise.henry@utsouthwestern.eduGervaise Henrygervaise.henry@utsouthwestern.edu