Merge requests · Astrocyte

Add new lib options to biohpc config

cellranger_count!81 · created Nov 20, 2020 by Gervaise Henry 3.0.0
Doing critical
updated Nov 20, 2020
Resolve "Add 5GEXPE/SE as library options"

cellranger_count!80 · created Nov 20, 2020 by Gervaise Henry 3.0.0
Doing critical
updated Nov 20, 2020
Add ulimit -u to all cellranger processes 2 of 7 checklist items completed

cellranger_count!66 · created Apr 20, 2020 by Gervaise Henry v2.1.1
Doing To Do bug confirmed critical
updated Apr 20, 2020
Resolve "Add 3':5' param"

cellranger_count!60 · created Apr 14, 2020 by Gervaise Henry v2.1.1
Doing critical enhancement
- Merged
updated Apr 14, 2020
Resolve "BUG: thread error on Astrocyte"

cellranger_count!59 · created Feb 21, 2020 by Gervaise Henry v2.1.1
Doing bug confirmed critical
updated Feb 21, 2020
Resolve "Fix astrocyte regex"

cellranger_mkfastq!17 · created Apr 25, 2019 by Gervaise Henry
bug critical
updated Apr 25, 2019
Fix Astrocyte design file regex

cellranger_mkfastq!16 · created Apr 25, 2019 by Gervaise Henry
bug critical
updated Apr 25, 2019
Remove multiqc module 3 of 7 checklist items completed

cellranger_count!69 · created Apr 26, 2020 by Gervaise Henry
To Do bug
updated Apr 26, 2020
Resolve 37-Design File Check

cellranger_count!58 · created Nov 07, 2019 by Jeremy Mathews v2.1.1
bug
updated Nov 07, 2019
Fix #34 to remove trailing and leading whitespace in design file contents

cellranger_mkfastq!54 · created Nov 07, 2019 by Jeremy Mathews v2.1.5
bug enhancement
updated Nov 07, 2019
Resolve "Design file - filename with spaces error"

cellranger_mkfastq!53 · created Aug 29, 2019 by Jeremy Mathews v2.1.5
bug confirmed
updated Sep 03, 2019
Remove spaces from design file

cellranger_mkfastq!52 · created Aug 29, 2019 by Jeremy Mathews v2.1.5
bug confirmed
- Closed
updated Aug 29, 2019
Resolve "Fix CountDesign"

cellranger_mkfastq!44 · created Aug 05, 2019 by Jeremy Mathews v1.3.0
bug
updated Aug 05, 2019
Resolve "blank page on survival plot download"

tcga_shiny!14 · created May 22, 2019 by Jeremy Mathews 1.0.1
bug
updated May 22, 2019
Resolve "Handle multi-flowcells in fastqc and multiqc"

cellranger_mkfastq!18 · created Apr 26, 2019 by Gervaise Henry
To Do bug
updated Apr 26, 2019
11 fastqcoptimize

cellranger_mkfastq!10 · created Apr 11, 2019 by Jonathan Gesell
bug
- Merged
- 1
updated Apr 12, 2019
Added new Docker file for motif search (named meme-5.5.4) installed from...

chipseq_analysis!76 · created Oct 16, 2024 by Thamer Alsulaiman master
updated Feb 28, 2025
Containerized version with meme-chip 5.5.4

chipseq_analysis!75 · created Sep 05, 2024 by Thamer Alsulaiman
updated Feb 28, 2025
Fix bugs in published version 2.0.0

rnaseq!11 · created Mar 22, 2022 by Peng Lian
- Merged
updated Mar 22, 2022
Draft: Resolve "Update nf-tower token"

chipseq_analysis!74 · created Jul 25, 2021 by Venkat Malladi 2.0.0
critical
updated Jul 28, 2021