Merge requests · Astrocyte

Resolve "Add pytest to CI"

cellranger_mkfastq!40 · created Jul 19, 2019 by Jeremy Mathews v1.2.0
To Do documentation
updated Jul 22, 2019
Resolve "add plotProfile" 5 of 5 checklist items completed

chipseq_analysis!55 · created Jul 18, 2019 by Jeremy Mathews 1.1.1 master
enhancement
- Merged
- 4
updated Jul 19, 2019
Resolve "Single control or experiment fails at call peaks macs" 4 of 4 checklist items completed

chipseq_analysis!54 · created Jul 12, 2019 by Jeremy Mathews 1.0.6 master
enhancement
- Merged
- 2
updated Jul 30, 2019
fixed style

cellranger_mkfastq!39 · created Jul 10, 2019 by Gervaise Henry v1.2.0
documentation
- Merged
updated Jul 10, 2019
fixed style

cellranger_count!48 · created Jul 10, 2019 by Gervaise Henry v1.2.0
documentation
updated Jul 10, 2019
Update gitignore with nextflow and update software reference test

chipseq_analysis!53 · created Jul 10, 2019 by Jeremy Mathews 1.0.6 master
enhancement
updated Jul 10, 2019
Create Design file for count with 1 bcl input

cellranger_mkfastq!38 · created Jul 08, 2019 by Jeremy Mathews v1.2.0
To Do enhancement
updated Jul 08, 2019
Issues #57 and #59 cause Spencer said today 3 of 3 checklist items completed

chipseq_analysis!50 · created Jul 08, 2019 by Jeremy Mathews 1.0.6 master
enhancement
- Merged
- 1
updated Jul 09, 2019
Resolve "Add MultiQC"

cellranger_count!47 · created Jun 28, 2019 by Gervaise Henry v1.1.0
To Do enhancement
updated Jun 28, 2019
Resolve "Add references to multiqc report" and Update README

cellranger_mkfastq!37 · created Jun 26, 2019 by Jeremy Mathews v1.2.0
To Do enhancement
updated Jun 26, 2019
Fix fasta file refernce and add check for correct genome version 6 of 6 checklist items completed

chipseq_analysis!49 · created May 31, 2019 by Jeremy Mathews 1.0.6 master
bug enhancement
updated May 31, 2019
Resolve "Move module load into nextflow process"

cellranger_count!43 · created May 24, 2019 by Jeremy Mathews v1.1.0
enhancement
updated May 24, 2019
Resolve "Move untarBCL code into a bash script w/ file folder check"

cellranger_mkfastq!35 · created May 24, 2019 by Jeremy Mathews v1.2.0
enhancement
updated May 24, 2019
Develop

tcga_shiny!18 · created May 24, 2019 by Gervaise Henry 1.0.1 master
updated May 24, 2019
Fix PDF Legend

tcga_shiny!17 · created May 24, 2019 by Jeremy Mathews 1.0.1
enhancement
updated May 24, 2019
Develop

tcga_shiny!16 · created May 23, 2019 by Gervaise Henry 1.0.1 master
updated May 23, 2019
Remove Legend From BoxPlots

tcga_shiny!15 · created May 23, 2019 by Jeremy Mathews 1.0.1
To Do enhancement
updated May 23, 2019
Resolve "blank page on survival plot download"

tcga_shiny!14 · created May 22, 2019 by Jeremy Mathews 1.0.1
bug
updated May 22, 2019
Module Load moved to top of nextflow processes

cellranger_count!41 · created May 22, 2019 by Jeremy Mathews v1.1.0
To Do enhancement
updated May 22, 2019
Resolve "Add error checking for filename/folder names"

cellranger_mkfastq!32 · created May 21, 2019 by Jeremy Mathews v1.2.0
Doing enhancement
updated May 21, 2019