Merge requests · Astrocyte

Resolve "Cleanup process outputs"

cellranger_mkfastq!56 · created Nov 07, 2019 by Gervaise Henry v2.1.5
enhancement
updated Nov 07, 2019
Fix #34 to remove trailing and leading whitespace in design file contents

cellranger_mkfastq!54 · created Nov 07, 2019 by Jeremy Mathews v2.1.5
bug enhancement
updated Nov 07, 2019
Aws test

sra_pipeline!42 · created Oct 08, 2019 by Jonathan Gesell AWS Functionality
Updates testing
updated Oct 09, 2019
Deleted workflow/output/.gitkeep, workflow/main-aws.nf files

sra_pipeline!43 · created Oct 08, 2019 by Jonathan Gesell
Updates testing
updated Oct 09, 2019
Updated to bicfbase:1.3

sra_pipeline!40 · created Oct 01, 2019 by Jonathan Gesell
Updates
updated Oct 01, 2019
Update paired-end diff to skip this test. 3 of 3 checklist items completed

chipseq_analysis!60 · created Sep 16, 2019 by Venkat Malladi 1.1.1 master
bug
updated Sep 17, 2019
Resolve "xcor.py, --random-source fails if file is too small" 3 of 3 checklist items completed

chipseq_analysis!58 · created Aug 27, 2019 by Jeremy Mathews 1.1.1 master
- Merged
- 6
updated Sep 12, 2019
Updated checkDesignFile for Astrocyte functionality.

sra_pipeline!37 · created Sep 11, 2019 by Jonathan Gesell Astrocyte Functionality
Bug fixes
updated Sep 11, 2019
Resolve "Update to bicfbase:1.1"

sra_pipeline!36 · created Sep 10, 2019 by Jonathan Gesell Astrocyte Functionality
Updates error correction
updated Sep 10, 2019
Resolve "Design file - filename with spaces error"

cellranger_mkfastq!53 · created Aug 29, 2019 by Jeremy Mathews v2.1.5
bug confirmed
updated Sep 03, 2019
add in error strategy

rnaseq!8 · created Aug 27, 2019 by Jeremy Mathews
updated Aug 28, 2019
Corrected check design to output an explanation per error.

sra_pipeline!35 · created Aug 28, 2019 by Jonathan Gesell Astrocyte Functionality
Bug fixes
updated Aug 28, 2019
Vizapp

cellranger_mkfastq!50 · created Aug 27, 2019 by Gervaise Henry
updated Aug 27, 2019
Split app.R into server and UI

cellranger_mkfastq!48 · created Aug 27, 2019 by Jeremy Mathews
updated Aug 27, 2019
Add Vizapp of multiqc results

cellranger_mkfastq!47 · created Aug 27, 2019 by Jeremy Mathews
updated Aug 27, 2019
Check Design for SRP/ERP/DRP and remove return carriage

sra_pipeline!34 · created Aug 16, 2019 by Jeremy Mathews
updated Aug 16, 2019
Vizapp

variant_germline!2 · created Aug 15, 2019 by Jeremy Mathews
updated Aug 15, 2019
Develop

cellranger_mkfastq!46 · created Aug 14, 2019 by Gervaise Henry v1.3.1 master
documentation
updated Aug 14, 2019
Develop

cellranger_count!57 · created Aug 14, 2019 by Gervaise Henry v1.2.0 master
enhancement
updated Aug 14, 2019
Develop

cellranger_mkfastq!45 · created Aug 14, 2019 by Gervaise Henry v1.3.0 master
updated Aug 14, 2019