Merge requests · Astrocyte

Added parallel decompression of BCL file using pigz

cellranger_mkfastq!1 · created Mar 21, 2019 by Jonathan Gesell master
updated Mar 21, 2019
Astrocyte

tcga_shiny!2 · created Mar 21, 2019 by Gervaise Henry master
updated Mar 21, 2019
Resolve "New folders for all steps"

chipseq_analysis!22 · created Mar 16, 2019 by Venkat Malladi master
updated Mar 16, 2019
Resolve "skip motif search and diff bind"

chipseq_analysis!21 · created Mar 09, 2019 by Venkat Malladi master
- Merged
updated Mar 12, 2019
Develop

cellranger_count!22 · created Mar 12, 2019 by Gervaise Henry master
updated Mar 12, 2019
Resolve "Develop CI"

cellranger_count!21 · created Mar 12, 2019 by Gervaise Henry
updated Mar 12, 2019
Master

cellranger_count!20 · created Mar 12, 2019 by Gervaise Henry
updated Mar 12, 2019
Master

cellranger_count!19 · created Mar 11, 2019 by Gervaise Henry 14-ci
updated Mar 11, 2019
Develop

cellranger_count!18 · created Mar 11, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) master
updated Mar 11, 2019
Resolve "Add params from biohpc.config into main.nf"

cellranger_count!17 · created Mar 11, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0)
updated Mar 11, 2019
Resolve "Use SampleIds/ Experiment Id as file names throughtout pipeline"

chipseq_analysis!20 · created Mar 09, 2019 by Venkat Malladi master
- Merged
updated Mar 10, 2019
Develop

cellranger_count!16 · created Mar 10, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) master
updated Mar 10, 2019
Resolve "Make instructions"

cellranger_count!15 · created Mar 10, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0)
updated Mar 10, 2019
Resolve "Make param.genomeLocation have full path"

cellranger_count!14 · created Mar 10, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0)
updated Mar 10, 2019
Resolve "Add parameter for 10x kit version"

cellranger_count!12 · created Mar 05, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0)
updated Mar 05, 2019
Resolve "Create output directory option"

cellranger_count!11 · created Mar 05, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0)
updated Mar 05, 2019
Resolve "Fix config file"

cellranger_count!10 · created Mar 04, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0)
updated Mar 04, 2019
Resolve "Remove reference genome full folder"

cellranger_count!9 · created Mar 04, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0)
updated Mar 04, 2019
Resolve "Remove reference genome full folder"

cellranger_count!8 · created Mar 04, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0)
updated Mar 04, 2019
Resolve "Add cellranger references version 3.0.0 as options"

cellranger_count!7 · created Mar 04, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0)
updated Mar 04, 2019