Issues · Astrocyte

Fix README

sra_pipeline#28 · opened Nov 24, 2020 by Jeremy Mathews
- CLOSED
- 1
- 0
updated Nov 25, 2020
Upgrade to cellranger 5.0.0

cellranger_mkfastq#45 · opened Nov 20, 2020 by Gervaise Henry 3.0.0 To Do
- 0
updated Nov 20, 2020
Add 5GEXPE/SE as library options

cellranger_count#56 · opened Nov 20, 2020 by Gervaise Henry 3.0.0 Doing critical
- CLOSED
- 2
- 0
updated Nov 20, 2020
Add cellranger 5.0.0

cellranger_count#55 · opened Nov 20, 2020 by Gervaise Henry 3.0.0 To Do support
- 0
updated Nov 20, 2020
5GEX QC data not present in multiqc report

cellranger_count#54 · opened Nov 04, 2020 by Gervaise Henry 3.0.0 To Do bug confirmed
- 0
updated Nov 04, 2020
Add ability to handle dual index

cellranger_mkfastq#44 · opened Oct 30, 2020 by Gervaise Henry Pending To Do critical enhancement
- 4
updated Nov 03, 2020
Add output comments for untarBCL

cellranger_mkfastq#43 · opened Oct 29, 2020 by Gervaise Henry Pending To Do enhancement
- 1
updated Nov 03, 2020
Strip spaces in design file

chipseq_analysis#90 · opened Oct 20, 2020 by Venkat Malladi 2.0.0 bug
- 0
updated Dec 29, 2020
Ref 2020-A not compatible with cellrangers < 4.0.0

cellranger_count#53 · opened Oct 16, 2020 by Gervaise Henry 3.0.0 To Do bug
- 1
updated Nov 20, 2020
Generate QC Plot

cellranger_count#52 · opened Sep 18, 2020 by Jeremy Mathews
- 0
updated Sep 18, 2020
Diffbind is tsv not csv

chipseq_analysis#89 · opened Sep 07, 2020 by Venkat Malladi 2.0.0 bug
- 0
updated Dec 29, 2020
Update to Astocyte 0.4.0 4 of 4 tasks completed

cellranger_mkfastq#42 · opened Sep 07, 2020 by Venkat Malladi To Do
- 1
- 0
updated Sep 07, 2020
Add flag for SAM instead of FastQ

sra_pipeline#27 · opened Aug 26, 2020 by Jonathan Gesell New Feature To Do Updates
- 0
updated Aug 26, 2020
Fix issue downloading and spliting for single cell data

sra_pipeline#26 · opened Aug 17, 2020 by Venkat Malladi Bug fixes
- 2
updated Aug 21, 2020
Version Zenodo

cellranger_count#51 · opened Aug 14, 2020 by Gervaise Henry 2.2.0
- CLOSED
- 0
updated Aug 15, 2020
create down-sampled test data

chipseq_analysis#88 · opened Aug 07, 2020 by Spencer Barnes
- 0
updated Aug 07, 2020
Generate Raw RDS file

cellranger_count#50 · opened Jul 31, 2020 by Venkat Malladi 2.2.0 Doing enhancement
- CLOSED
- 1
- 2
updated Aug 14, 2020
map reads fails to make bam files for long reads

atacseq_analysis#43 · opened Jul 28, 2020 by Venkat Malladi bug critical
- CLOSED
- 1
- 1
updated Jul 29, 2020
Add license.

methylation_analysis#6 · opened Jul 17, 2020 by Venkat Malladi 1.0.0
- CLOSED
- 1
- 0
updated Dec 29, 2020
Add back tags per process

methylation_analysis#5 · opened Jul 11, 2020 by Venkat Malladi 1.0.0
- 0
updated Dec 29, 2020