Issues · Astrocyte

Update Readme

methylation_analysis#2 · opened Jul 11, 2020 by Venkat Malladi 1.0.0
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updated Dec 29, 2020
Add a changelog

methylation_analysis#3 · opened Jul 11, 2020 by Venkat Malladi 1.0.0
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updated Dec 29, 2020
Add back tags per process

methylation_analysis#5 · opened Jul 11, 2020 by Venkat Malladi 1.0.0
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updated Dec 29, 2020
Use specific meme file in motif search

chipseq_analysis#70 · opened Dec 13, 2019 by Holly Ruess 2.0.0 To Do enhancement
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updated Dec 29, 2020
Filter reads increase memory

chipseq_analysis#62 · opened Jul 31, 2019 by Venkat Malladi 2.0.0 bug discussion
- 1
updated Dec 29, 2020
Trimming Comparison

atacseq_analysis#6 · opened Apr 25, 2019 by Jonathan Gesell Optimizations
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updated Dec 29, 2020
Annotate Diffbind output

chipseq_analysis#63 · opened Aug 25, 2019 by Holly Ruess 2.0.0 To Do enhancement
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updated Dec 29, 2020
Strip spaces in design file

chipseq_analysis#90 · opened Oct 20, 2020 by Venkat Malladi 2.0.0 bug
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updated Dec 29, 2020
Diffbind is tsv not csv

chipseq_analysis#89 · opened Sep 07, 2020 by Venkat Malladi 2.0.0 bug
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updated Dec 29, 2020
Add cellranger 5.0.0

cellranger_count#55 · opened Nov 20, 2020 by Gervaise Henry 3.0.0 To Do support
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updated Nov 20, 2020
Upgrade to cellranger 5.0.0

cellranger_mkfastq#45 · opened Nov 20, 2020 by Gervaise Henry 3.0.0 To Do
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updated Nov 20, 2020
Ref 2020-A not compatible with cellrangers < 4.0.0

cellranger_count#53 · opened Oct 16, 2020 by Gervaise Henry 3.0.0 To Do bug
- 1
updated Nov 20, 2020
5GEX QC data not present in multiqc report

cellranger_count#54 · opened Nov 04, 2020 by Gervaise Henry 3.0.0 To Do bug confirmed
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updated Nov 04, 2020
Update multiqc version/references report

cellranger_count#48 · opened Jun 23, 2020 by Gervaise Henry 3.0.0 To Do documentation enhancement
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updated Nov 03, 2020
Add simple integration CI test

cellranger_count#46 · opened Apr 26, 2020 by Gervaise Henry 3.0.0 To Do enhancement
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updated Nov 03, 2020
Add ability to handle dual index

cellranger_mkfastq#44 · opened Oct 30, 2020 by Gervaise Henry Pending To Do critical enhancement
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updated Nov 03, 2020
Add output comments for untarBCL

cellranger_mkfastq#43 · opened Oct 29, 2020 by Gervaise Henry Pending To Do enhancement
- 1
updated Nov 03, 2020
Update multiqc version/references report

cellranger_mkfastq#40 · opened Jun 23, 2020 by Gervaise Henry Pending To Do documentation enhancement
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updated Nov 03, 2020
Add test for astrocyte specific run of pipline 3 of 3 tasks completed

cellranger_mkfastq#41 · opened Jun 26, 2020 by Venkat Malladi To Do bug
- 1
- 0
updated Oct 30, 2020
Generate QC Plot

cellranger_count#52 · opened Sep 18, 2020 by Jeremy Mathews
- 0
updated Sep 18, 2020