Issues · Astrocyte

Add mapping and trimming

chipseq_analysis#3 · opened Sep 30, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Oct 11, 2017
Bam Stats and Filter

chipseq_analysis#4 · opened Oct 09, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Oct 11, 2017
Add in grouping variable

chipseq_analysis#10 · opened Oct 11, 2017 by Venkat Malladi 1.0.0 bug
- CLOSED
- 1
- 0
updated Oct 11, 2017
Update deeptools

chipseq_analysis#6 · opened Oct 11, 2017 by Venkat Malladi 1.0.0 bug enhancement
- CLOSED
- 1
- 0
updated Oct 18, 2017
Remove qc_fastq.py

chipseq_analysis#11 · opened Oct 17, 2017 by Venkat Malladi 1.0.0 bug
- CLOSED
- 1
- 0
updated Oct 18, 2017
Make tagAlign files

chipseq_analysis#12 · opened Oct 18, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Oct 23, 2017
Include Phantompeakqualtools step

chipseq_analysis#5 · opened Oct 11, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 1
updated Oct 24, 2017
Pool and Pseudoreplication

chipseq_analysis#13 · opened Oct 25, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Oct 30, 2017
Add in Macs2 support

chipseq_analysis#7 · opened Oct 11, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Nov 20, 2017
star broken

rnaseq#1 · opened Apr 03, 2018 by Spencer Barnes
- CLOSED
- 3
updated Apr 30, 2018
DEA Skip

rnaseq#9 · opened May 15, 2018 by Jonathan Gesell
- CLOSED
- 1
updated May 16, 2018
workflow/process_scripts empty after cloning

rnaseq#10 · opened Nov 02, 2018 by Holly Ruess
- CLOSED
- 1
updated Nov 02, 2018
Update RNASeq Shiny Code

rnaseq#3 · opened Apr 10, 2018 by Venkat Malladi
- CLOSED
- 2
- 0
updated Nov 19, 2018
Fix Unreplicated experiment naive overlap

chipseq_analysis#16 · opened Apr 10, 2018 by Venkat Malladi
- CLOSED
- 1
updated Dec 16, 2018
invalid option in map_qc.py

chipseq_analysis#20 · opened Dec 03, 2018 by Spencer Barnes bug
- CLOSED
- 1
updated Jan 05, 2019
broken link in documentation

chipseq_analysis#18 · opened Jun 13, 2018 by Spencer Barnes 1.0.0 bug
- CLOSED
- 1
updated Jan 05, 2019
experimentQC plots are empty in PE

chipseq_analysis#25 · opened Jan 03, 2019 by Holly Ruess 1.0.0 bug
- CLOSED
- 0
updated Jan 06, 2019
Add defined output folder

chipseq_analysis#22 · opened Dec 26, 2018 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 0
updated Jan 06, 2019
Add in current chip-analysis functionality.

chipseq_analysis#15 · opened Nov 20, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 2
- 1
updated Jan 11, 2019
Add Pearson correlation, and make Spearman and Pearson Corr Plots pdf

chipseq_analysis#27 · opened Jan 16, 2019 by Holly Ruess 1.0.0
- CLOSED
- 1
updated Jan 31, 2019