Issues · Astrocyte

Add ability to handle dual index

cellranger_mkfastq#44 · opened Oct 30, 2020 by Gervaise Henry Pending To Do critical enhancement
- 4
updated Nov 03, 2020
5GEX QC data not present in multiqc report

cellranger_count#54 · opened Nov 04, 2020 by Gervaise Henry 3.0.0 To Do bug confirmed
- 0
updated Nov 04, 2020
Ref 2020-A not compatible with cellrangers < 4.0.0

cellranger_count#53 · opened Oct 16, 2020 by Gervaise Henry 3.0.0 To Do bug
- 1
updated Nov 20, 2020
Add test for astrocyte specific run of pipline 3 of 3 tasks completed

cellranger_mkfastq#41 · opened Jun 26, 2020 by Venkat Malladi To Do bug
- 1
- 0
updated Oct 30, 2020
Add test for astrocyte 0.3.1 0 of 3 tasks completed

cellranger_count#49 · opened Jun 26, 2020 by Venkat Malladi Wait bug
- 0
updated Aug 02, 2020
Add cellranger 5.0.0

cellranger_count#55 · opened Nov 20, 2020 by Gervaise Henry 3.0.0 To Do support
- 0
updated Nov 20, 2020
Upgrade to cellranger 5.0.0

cellranger_mkfastq#45 · opened Nov 20, 2020 by Gervaise Henry 3.0.0 To Do
- 0
updated Nov 20, 2020
Add output comments for untarBCL

cellranger_mkfastq#43 · opened Oct 29, 2020 by Gervaise Henry Pending To Do enhancement
- 1
updated Nov 03, 2020
Strip spaces in design file

chipseq_analysis#90 · opened Oct 20, 2020 by Venkat Malladi 2.0.0 bug
- 0
updated Dec 29, 2020
Generate QC Plot

cellranger_count#52 · opened Sep 18, 2020 by Jeremy Mathews
- 0
updated Sep 18, 2020
Diffbind is tsv not csv

chipseq_analysis#89 · opened Sep 07, 2020 by Venkat Malladi 2.0.0 bug
- 0
updated Dec 29, 2020
Update to Astocyte 0.4.0 4 of 4 tasks completed

cellranger_mkfastq#42 · opened Sep 07, 2020 by Venkat Malladi To Do
- 1
- 0
updated Sep 07, 2020
Add flag for SAM instead of FastQ

sra_pipeline#27 · opened Aug 26, 2020 by Jonathan Gesell New Feature To Do Updates
- 0
updated Aug 26, 2020
Fix issue downloading and spliting for single cell data

sra_pipeline#26 · opened Aug 17, 2020 by Venkat Malladi Bug fixes
- 2
updated Aug 21, 2020
create down-sampled test data

chipseq_analysis#88 · opened Aug 07, 2020 by Spencer Barnes
- 0
updated Aug 07, 2020
Add back tags per process

methylation_analysis#5 · opened Jul 11, 2020 by Venkat Malladi 1.0.0
- 0
updated Dec 29, 2020
Add a changelog

methylation_analysis#3 · opened Jul 11, 2020 by Venkat Malladi 1.0.0
- 0
updated Dec 29, 2020
Update Readme

methylation_analysis#2 · opened Jul 11, 2020 by Venkat Malladi 1.0.0
- 0
updated Dec 29, 2020
update test for astrocyte 0.3.1

sra_pipeline#25 · opened Jun 26, 2020 by Venkat Malladi
- 0
updated Jun 26, 2020
Update multiqc version/references report

atacseq_analysis#41 · opened Jun 23, 2020 by Gervaise Henry Version 2.1.0 documentation enhancment
- 1
- 0
updated Jul 01, 2020