Issues · Astrocyte

Add in blacklist

chipseq_analysis#9 · opened Oct 11, 2017 by Venkat Malladi 2.0.0 To Do enhancement
- 0
updated Jun 23, 2020
Add in peak call with SPP and IDR

chipseq_analysis#14 · opened Nov 14, 2017 by Venkat Malladi 2.0.0 To Do enhancement
- 0
updated Jun 23, 2020
RNASeq New Isoform Detection

rnaseq#2 · opened Apr 10, 2018 by Brandi Cantarel
- 0
updated Apr 10, 2018
RNASeq Pathway Analysis Mouse support

rnaseq#4 · opened Apr 10, 2018 by Venkat Malladi
- 0
updated Apr 10, 2018
Deeptools QC metics between samples

rnaseq#5 · opened Apr 10, 2018 by Venkat Malladi
- 0
updated Apr 10, 2018
Genearte Signal Tracks

rnaseq#6 · opened Apr 10, 2018 by Venkat Malladi
- 0
updated Apr 10, 2018
map_reads failure case

atacseq_analysis#1 · opened Apr 12, 2018 by Spencer Barnes Version 2.1.0 bug
- 0
updated Jun 23, 2020
Vizapp shiny option: Implement Bookmarking for saving sessions on shiny app.

rnaseq#7 · opened Apr 17, 2018 by Min Kim
- 0
updated Apr 17, 2018
Update of RNASeq documentation and check_designfile.pl

rnaseq#8 · opened May 11, 2018 by Spencer Barnes
- 2
updated May 16, 2018
Add ability to count additional features

cellranger_count#10 · opened Mar 04, 2019 by Gervaise Henry Pending To Do enhancement
- 0
updated Jun 21, 2020
Memory

chipseq_analysis#32 · opened Mar 12, 2019 by Venkat Malladi 3.0.0 discussion
- 0
updated Jun 23, 2020
Move params out of main.nf

cellranger_count#16 · opened Mar 12, 2019 by Gervaise Henry Wait enhancement
- 2
updated Apr 13, 2020
Optimizations

chipseq_analysis#39 · opened Apr 23, 2019 by Jonathan Gesell 3.0.0 discussion enhancement
- 0
updated Jun 23, 2020
Trimming Comparison

atacseq_analysis#6 · opened Apr 25, 2019 by Jonathan Gesell Optimizations
- 0
updated Dec 29, 2020
Move params out of main.nf

cellranger_mkfastq#19 · opened Apr 26, 2019 by Gervaise Henry Wait enhancement
- 1
updated Apr 26, 2019
Fix dea.R

rnaseq#12 · opened Apr 29, 2019 by Jonathan Gesell
- 0
updated Apr 29, 2019
An error in 'trimgalore.sh'

rnaseq#13 · opened May 02, 2019 by Jeon Lee
- 0
updated May 02, 2019
diffbind design file error

chipseq_analysis#44 · opened May 09, 2019 by Spencer Barnes 2.0.0 To Do bug discussion
- 1
updated Jun 23, 2020
Make both astrocyte compatable and other cluster compatable

chipseq_analysis#60 · opened Jul 10, 2019 by Holly Ruess 3.0.0 To Do enhancement
- 0
updated Jun 23, 2020
Filter reads increase memory

chipseq_analysis#62 · opened Jul 31, 2019 by Venkat Malladi 2.0.0 bug discussion
- 1
updated Dec 29, 2020