Issues · Astrocyte

pool and pseudoreplicate

atacseq_analysis#4 · opened May 11, 2018 by Spencer Barnes Version 2.0 critical
- CLOSED
- 1
updated Jan 02, 2020
Re-direct output

atacseq_analysis#5 · opened Feb 20, 2019 by Holly Ruess Version 2.0 critical
- CLOSED
- 0
updated Jan 02, 2020
Change output from png to pdf

atacseq_analysis#11 · opened May 10, 2019 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 0
updated Jan 02, 2020
AWSify

cellranger_mkfastq#36 · opened Dec 23, 2019 by Gervaise Henry v2.1.5
- CLOSED
- 0
updated Jan 01, 2020
Fix Convert Reads

atacseq_analysis#18 · opened Dec 18, 2019 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 1
- 0
updated Dec 27, 2019
Fix Experiment QC

atacseq_analysis#17 · opened Dec 18, 2019 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 1
- 0
updated Dec 20, 2019
Fix Filter Reads

atacseq_analysis#15 · opened Dec 12, 2019 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 1
- 0
updated Dec 18, 2019
Fix Align Reads

atacseq_analysis#16 · opened Dec 12, 2019 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 1
- 0
updated Dec 16, 2019
Fix Trim Reads

atacseq_analysis#14 · opened Dec 09, 2019 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 4
- 0
updated Dec 11, 2019
update check design file

atacseq_analysis#13 · opened Dec 06, 2019 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 1
- 0
updated Dec 09, 2019
Remove unnecessary columns from design file

atacseq_analysis#12 · opened Dec 03, 2019 by Holly Ruess Version 2.0
- CLOSED
- 2
- 0
updated Dec 04, 2019
Update script to incorrpoarte chagnes from ChiP_seq pipeline

atacseq_analysis#10 · opened May 02, 2019 by Venkat Malladi Version 1.0 critical
- CLOSED
- 1
updated Dec 03, 2019
Make ATAC-seq pipeline generalizibe for Open Chromatin

atacseq_analysis#8 · opened May 02, 2019 by Venkat Malladi Version 1.0 enhancment
- CLOSED
- 1
updated Dec 03, 2019
Cleanup process outputs

cellranger_mkfastq#35 · opened Nov 07, 2019 by Gervaise Henry v2.1.5 enhancement
- CLOSED
- 2
- 0
updated Nov 08, 2019
Check for space in design file error

cellranger_count#37 · opened Sep 03, 2019 by Gervaise Henry v2.1.1 bug
- CLOSED
- 1
- 1
updated Nov 07, 2019
add checks to checkDesign process

cellranger_mkfastq#34 · opened Sep 11, 2019 by Spencer Barnes v2.1.5 bug enhancement
- CLOSED
- 1
- 2
updated Nov 07, 2019
Untar folder structure

cellranger_mkfastq#33 · opened Aug 27, 2019 by Gervaise Henry v2.1.5 enhancement
- CLOSED
- 2
updated Sep 11, 2019
Update to bicfbase:1.1

sra_pipeline#9 · opened Sep 09, 2019 by Jonathan Gesell Updates
- CLOSED
- 1
- 0
updated Sep 10, 2019
Design file - filename with spaces error

cellranger_mkfastq#31 · opened Aug 27, 2019 by Gervaise Henry v2.1.5 bug confirmed
- CLOSED
- 2
- 0
updated Sep 03, 2019
Sample ID for design file 3 of 3 tasks completed

cellranger_mkfastq#32 · opened Aug 27, 2019 by Gervaise Henry v2.1.5 documentation
- CLOSED
- 1
- 0
updated Sep 03, 2019