Issues · Astrocyte

Single control or experiment fails at call peaks macs

chipseq_analysis#58 · opened Jul 02, 2019 by Holly Ruess 1.1.0 enhancement
- CLOSED
- 1
- 0
updated Mar 15, 2020
Testing fails on new update

chipseq_analysis#65 · opened Sep 16, 2019 by Venkat Malladi 1.1.0 bug
- CLOSED
- 2
- 0
updated Mar 15, 2020
Software References aren't in Multic

chipseq_analysis#66 · opened Sep 19, 2019 by Venkat Malladi 1.1.0 bug
- CLOSED
- 1
- 1
updated Mar 15, 2020
Python Version not in Software Version

chipseq_analysis#67 · opened Sep 19, 2019 by Venkat Malladi 1.1.0 bug
- CLOSED
- 1
- 0
updated Mar 15, 2020
Remove artifacts

chipseq_analysis#68 · opened Sep 26, 2019 by Venkat Malladi 1.1.0 bug
- CLOSED
- 1
- 0
updated Mar 15, 2020
Update version of multiqc

chipseq_analysis#76 · opened Feb 10, 2020 by Holly Ruess 1.1.0 bug enhancement
- CLOSED
- 1
updated Mar 15, 2020
Generate MultiQC report

atacseq_analysis#26 · opened Jan 06, 2020 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 1
- 0
updated Feb 25, 2020
AWSify

cellranger_count#39 · opened Dec 23, 2019 by Gervaise Henry v2.1.1 Doing enhancement
- CLOSED
- 1
- 0
updated Feb 21, 2020
Update multiqc with new singularity images

chipseq_analysis#72 · opened Jan 07, 2020 by Venkat Malladi
- CLOSED
- 1
updated Feb 12, 2020
Update to Singularity Image 2.0.0 compatability.

sra_pipeline#12 · opened Jan 16, 2020 by Jonathan Gesell Singularity 2.0.0 Compatability Updates
- CLOSED
- 2
- 0
updated Feb 05, 2020
Update Astrocyte instructions

rnaseq#19 · opened Jan 07, 2020 by Venkat Malladi
- CLOSED
- 1
- 1
updated Jan 07, 2020
Fix BioHPC config

atacseq_analysis#25 · opened Jan 06, 2020 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 1
- 0
updated Jan 07, 2020
Fix call peaks MACs

atacseq_analysis#23 · opened Jan 02, 2020 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 1
updated Jan 07, 2020
fix consensus peaks

atacseq_analysis#24 · opened Jan 03, 2020 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 1
- 0
updated Jan 07, 2020
Make hg19 test

atacseq_analysis#22 · opened Jan 01, 2020 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 0
updated Jan 06, 2020
Shift is incorrect for ATAC-seq

atacseq_analysis#7 · opened May 02, 2019 by Venkat Malladi Version 2.0 bug
- CLOSED
- 1
updated Jan 06, 2020
Fix Pool and Pseudoreps

atacseq_analysis#20 · opened Dec 20, 2019 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 1
- 0
updated Jan 03, 2020
Fix cross correlation

atacseq_analysis#19 · opened Dec 19, 2019 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 1
- 0
updated Jan 03, 2020
deeptools version 3 error

atacseq_analysis#2 · opened May 11, 2018 by Spencer Barnes Version 2.0 enhancment
- CLOSED
- 1
updated Jan 02, 2020
mitochondrial chromosome reads

atacseq_analysis#3 · opened May 11, 2018 by Spencer Barnes Version 2.0 critical
- CLOSED
- 0
updated Jan 02, 2020