Issues · Astrocyte

Update multiqc version/references report

chipseq_analysis#85 · opened Jun 23, 2020 by Gervaise Henry 2.0.0 To Do documentation enhancement
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updated Jun 23, 2020
Update multiqc version/references report

cellranger_count#48 · opened Jun 23, 2020 by Gervaise Henry 3.0.0 To Do documentation enhancement
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updated Nov 03, 2020
Update multiqc version/references report

cellranger_mkfastq#40 · opened Jun 23, 2020 by Gervaise Henry Pending To Do documentation enhancement
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updated Nov 03, 2020
Containerize Pipeline

sra_pipeline#24 · opened Jun 17, 2020 by Jonathan Gesell Azure Functionality Doing Updates testing
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updated Jun 17, 2020
Parallelize tests

sra_pipeline#22 · opened Jun 16, 2020 by Jonathan Gesell Doing Updates testing
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updated Jun 16, 2020
Unique Experiment check

chipseq_analysis#83 · opened May 24, 2020 by Venkat Malladi 2.0.0
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updated Jun 23, 2020
Add concatination flag

sra_pipeline#19 · opened Apr 30, 2020 by Jonathan Gesell Astrocyte Functionality Bug fixes Doing
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updated Apr 30, 2020
Add simple integration CI test

cellranger_count#46 · opened Apr 26, 2020 by Gervaise Henry 3.0.0 To Do enhancement
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updated Nov 03, 2020
update version of nextflow

atacseq_analysis#36 · opened Feb 26, 2020 by Holly Ruess Version 2.1.0 critical enhancment
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updated Jun 23, 2020
nullDataError

sra_pipeline#13 · opened Feb 06, 2020 by Jonathan Gesell Bug fixes To Do
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updated Apr 20, 2020
Annotepeaks

chipseq_analysis#74 · opened Feb 03, 2020 by Venkat Malladi 2.0.0 Doing enhancement
- 1
updated Jun 23, 2020
Change to 256 only if job fails

atacseq_analysis#35 · opened Jan 09, 2020 by Holly Ruess Version 2.1.0 enhancment
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updated Jun 23, 2020
Diff Peak analysis

atacseq_analysis#34 · opened Jan 09, 2020 by Holly Ruess Version 2.1.0 enhancment
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updated Jun 23, 2020
Motif search in peaks

atacseq_analysis#33 · opened Jan 09, 2020 by Holly Ruess Version 2.1.0 enhancment
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updated Jun 23, 2020
Use specific meme file in motif search

chipseq_analysis#70 · opened Dec 13, 2019 by Holly Ruess 2.0.0 To Do enhancement
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updated Dec 29, 2020
File vs Channel

sra_pipeline#10 · opened Dec 03, 2019 by Jeremy Mathews To Do
- 1
- 3
updated Aug 27, 2020
add checks to determine if fastq files are in proper format and not truncated

chipseq_analysis#69 · opened Oct 30, 2019 by Spencer Barnes 2.0.0 To Do
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updated Jun 23, 2020
Containerization

chipseq_analysis#64 · opened Sep 12, 2019 by Jonathan Gesell 3.0.0 To Do
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updated Jun 23, 2020
Annotate Diffbind output

chipseq_analysis#63 · opened Aug 25, 2019 by Holly Ruess 2.0.0 To Do enhancement
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updated Dec 29, 2020
Statanal Fail on single replicate

rnaseq#17 · opened Aug 15, 2019 by Jeremy Mathews
- 1
updated Aug 30, 2019