Merge requests · BICF

Add Mingjie.

onboarding!14 · created Sep 26, 2019 by Venkat Malladi
- Merged
updated Sep 26, 2019
Add MultiQC to output. Add version and reference material. fix README

BICF/Astrocyte/cellranger_count!44 · created Jun 27, 2019 by Jeremy Mathews v1.1.0
To Do enhancement
- Closed
updated Jun 28, 2019
Add new directory

BICF/Astrocyte/sra_pipeline!16 · created Jun 12, 2019 by Jonathan Gesell
- Merged
updated Jun 12, 2019
Add new lib options to biohpc config

BICF/Astrocyte/cellranger_count!81 · created Nov 20, 2020 by Gervaise Henry 3.0.0
Doing critical
updated Nov 20, 2020
Add option for outdir.

BICF/Astrocyte/chipseq_analysis!16 · created Jan 06, 2019 by Venkat Malladi master
- Merged
- 1
updated Jan 06, 2019
Add orcide and update Gervaise.

onboarding!8 · created Apr 29, 2019 by Venkat Malladi
- Merged
updated Apr 29, 2019
Add quotes around paths in case of spaces

BICF/Astrocyte/cellranger_mkfastq!20 · created Apr 26, 2019 by Gervaise Henry master
updated Apr 26, 2019
Add References Reort and Markdown file; Update README file

BICF/Astrocyte/cellranger_mkfastq!36 · created Jun 25, 2019 by Jeremy Mathews v1.2.0
To Do enhancement
- Closed
updated Jun 26, 2019
Add software development.

onboarding!23 · created Apr 08, 2020 by Venkat Malladi
- Merged
updated Apr 08, 2020
Add ulimit -u to all cellranger processes 2 of 7 checklist items completed

BICF/Astrocyte/cellranger_count!66 · created Apr 20, 2020 by Gervaise Henry v2.1.1
Doing To Do bug confirmed critical
updated Apr 20, 2020
Add Vizapp of multiqc results

BICF/Astrocyte/cellranger_mkfastq!47 · created Aug 27, 2019 by Jeremy Mathews
updated Aug 27, 2019
Astrocyte

BICF/Astrocyte/tcga_shiny!2 · created Mar 21, 2019 by Gervaise Henry master
updated Mar 21, 2019
Astrocyte regex for files limit filenames

BICF/Astrocyte/cellranger_mkfastq!29 · created Apr 27, 2019 by Gervaise Henry v1.2.0
enhancement
updated Apr 27, 2019
Aws test

BICF/Astrocyte/sra_pipeline!42 · created Oct 08, 2019 by Jonathan Gesell AWS Functionality
Updates testing
updated Oct 09, 2019
Buzz lightyear

BICF/Astrocyte/cellranger_mkfastq!75 · created Nov 04, 2020 by Jeremy Mathews
- Merged
- 5
- Approved
updated Nov 20, 2020
Cellranger 4.0.0 ref 2020 a 8 of 8 checklist items completed

BICF/Astrocyte/cellranger_mkfastq!73 · created Nov 03, 2020 by Gervaise Henry 2.2.0
updated Nov 03, 2020
Cellranger 4.0.0 ref 2020 a

BICF/Astrocyte/cellranger_count!75 · created Aug 13, 2020 by Gervaise Henry 2.2.0 50-seurat.object
updated Aug 13, 2020
Cellranger 4.0.0 ref 2020 a

BICF/Astrocyte/cellranger_mkfastq!70 · created Jul 22, 2020 by Gervaise Henry containerize
updated Jul 22, 2020
Changed singularity container to allow for rendering of references. 3 of 3 checklist items completed

BICF/Astrocyte/chipseq_analysis!65 · created Feb 12, 2020 by Venkat Malladi 1.1.1 master
bug
updated Feb 18, 2020
Check Design for SRP/ERP/DRP and remove return carriage

BICF/Astrocyte/sra_pipeline!34 · created Aug 16, 2019 by Jeremy Mathews
updated Aug 16, 2019