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  • BICF
  • Issues

  • Open 76
  • Closed 273
  • All 349
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking
  • Version Zenodo
    BICF/Astrocyte/cellranger_count#51 · created Aug 14, 2020 by Gervaise Henry   2.2.0
    • CLOSED
    • 0
    updated Aug 15, 2020
  • Add Jon to author list   1 of 2 tasks completed
    BICF/Astrocyte/cellranger_count#47 · created Jun 22, 2020 by Gervaise Henry   2.2.0
    • CLOSED
    • 1
    updated Aug 14, 2020
  • Add in Fastqc
    BICF/Astrocyte/chipseq_analysis#1 · created Aug 30, 2017 by Venkat Malladi   rejected
    • CLOSED
    • 1
    • 1
    updated Apr 16, 2020
  • star broken
    BICF/Astrocyte/rnaseq#1 · created Apr 03, 2018 by Spencer Barnes
    • CLOSED
    • 3
    updated Apr 30, 2018
  • map_reads failure case
    BICF/Astrocyte/atacseq_analysis#1 · created Apr 12, 2018 by Spencer Barnes   Version 2.1.0   bug
    • 0
    updated Jun 23, 2020
  • Add cellranger v3.0.1
    BICF/Astrocyte/cellranger_count#1 · created Feb 06, 2019 by Gervaise Henry   Put on Astrocyte Production (1.0.0)   enhancement
    • CLOSED
    • 2
    • 0
    updated Feb 07, 2019
  • Migrate cellranger_count basics
    BICF/Astrocyte/cellranger_mkfastq#1 · created Mar 24, 2019 by Gervaise Henry   enhancement
    • CLOSED
    • 0
    updated Mar 28, 2019
  • RNAseq-ProcessScripts
    onboarding#1 · created Apr 26, 2019 by Holly Ruess
    • CLOSED
    • 1
    • 0
    updated Apr 26, 2019
  • Add testing scripts
    BICF/Astrocyte/sra_pipeline#1 · created May 03, 2019 by Jonathan Gesell   testing
    • CLOSED
    • 1
    • 0
    updated May 03, 2019
  • blank page on survival plot download
    BICF/Astrocyte/tcga_shiny#1 · created May 20, 2019 by Spencer Barnes   1.0.1   bug
    • CLOSED
    • 1
    • 2
    updated May 22, 2019
  • Add CI
    BICF/Astrocyte/variant_germline#1 · created May 31, 2019 by Jeremy Mathews
    • CLOSED
    • 1
    • 0
    updated Jun 18, 2019
  • Radiation Table
    BICF/KCE/kce_etl#1 · created Jul 09, 2019 by Venkat Malladi
    • CLOSED
    • 1
    • 0
    updated Dec 12, 2019
  • Install methylation
    BICF/Astrocyte/methylation_analysis#1 · created Jun 12, 2020 by Venkat Malladi   1.0.0
    • CLOSED
    • 1
    • 0
    updated Dec 29, 2020
  • Update test data
    BICF/Astrocyte/chipseq_analysis#2 · created Sep 28, 2017 by Venkat Malladi   enhancement
    • CLOSED
    • 1
    updated May 20, 2019
  • RNASeq New Isoform Detection
    BICF/Astrocyte/rnaseq#2 · created Apr 10, 2018 by Brandi Cantarel
    • CLOSED
    • 0
    updated Apr 13, 2021
  • deeptools version 3 error
    BICF/Astrocyte/atacseq_analysis#2 · created May 11, 2018 by Spencer Barnes   Version 2.0   enhancment
    • CLOSED
    • 1
    updated Jan 02, 2020
  • Remove reference genome full folder
    BICF/Astrocyte/cellranger_count#2 · created Feb 06, 2019 by Gervaise Henry   Put on Astrocyte Production (1.0.0)   enhancement
    • CLOSED
    • 2
    • 1
    updated Apr 27, 2019
  • Optimize mkfastq
    BICF/Astrocyte/cellranger_mkfastq#2 · created Mar 24, 2019 by Gervaise Henry   enhancement
    • CLOSED
    • 0
    updated Apr 05, 2019
  • Document Backups
    onboarding#2 · created Apr 26, 2019 by Venkat Malladi
    • CLOSED
    • 1
    • 0
    updated Apr 26, 2019
  • Add in Astrocyte Support
    BICF/Astrocyte/sra_pipeline#2 · created May 03, 2019 by Venkat Malladi
    • CLOSED
    • 4
    • 0
    updated May 29, 2019
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