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BICF
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BICF
Issues

Open 76
Closed 273
All 349

Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking

Update Astrocyte documentation and errors

BICF/Astrocyte/chipseq_analysis#36 · created Apr 22, 2019 by Venkat Malladi 1.0.0 bug
- CLOSED
- 1
- 0
updated Apr 22, 2019
Fix astrocyte run

BICF/Astrocyte/chipseq_analysis#35 · created Apr 22, 2019 by Venkat Malladi 1.0.0 bug
- CLOSED
- 2
- 0
updated Apr 22, 2019
Change location of multiqc config and name

BICF/Astrocyte/cellranger_mkfastq#14 · created Apr 21, 2019 by Venkat Malladi v1.1.0 suggestion
- CLOSED
- 1
- 0
updated Apr 26, 2019
Fix tests for software versions

BICF/Astrocyte/chipseq_analysis#34 · created Apr 19, 2019 by Venkat Malladi 1.0.0 bug
- CLOSED
- 1
- 0
updated Apr 20, 2019
Handle multi-flowcells in fastqc and multiqc

BICF/Astrocyte/cellranger_mkfastq#13 · created Apr 17, 2019 by Gervaise Henry v1.1.0 bug
- CLOSED
- 1
- 0
updated Apr 26, 2019
Move software version report to the bottom

BICF/Astrocyte/cellranger_mkfastq#12 · created Apr 12, 2019 by Gervaise Henry Astrocyte Production (v1.0.0) enhancement suggestion
- CLOSED
- 1
- 0
updated Apr 12, 2019
Speed up fastqc and/or multiqc

BICF/Astrocyte/cellranger_mkfastq#11 · created Apr 10, 2019 by Gervaise Henry Astrocyte Production (v1.0.0) enhancement
- CLOSED
- 0
updated Apr 12, 2019
Add references to multiqc report

BICF/Astrocyte/cellranger_mkfastq#10 · created Apr 10, 2019 by Gervaise Henry v1.2.0 enhancement
- CLOSED
- 2
- 0
updated Jul 22, 2019
Split multiqc fastqc by r1/r2/i1

BICF/Astrocyte/cellranger_mkfastq#9 · created Apr 09, 2019 by Gervaise Henry Astrocyte Production (v1.0.0) enhancement
- CLOSED
- 1
- 0
updated Apr 12, 2019
Create design file for cellranger_count pipeline

BICF/Astrocyte/cellranger_mkfastq#8 · created Apr 09, 2019 by Gervaise Henry v1.2.0 enhancement
- CLOSED
- 1
- 0
updated Jul 22, 2019
Update Documentation

BICF/Astrocyte/cellranger_mkfastq#7 · created Apr 08, 2019 by Gervaise Henry Astrocyte Production (v1.0.0) documentation
- CLOSED
- 1
- 0
updated May 24, 2019
Add MultiQC

BICF/Astrocyte/cellranger_mkfastq#6 · created Apr 05, 2019 by Gervaise Henry Astrocyte Production (v1.0.0) enhancement
- CLOSED
- 0
updated Apr 10, 2019
Change nextflow fastq rename to iterate sample not lane

BICF/Astrocyte/cellranger_count#19 · created Mar 27, 2019 by Gervaise Henry v1.1.0 bug critical
- CLOSED
- 1
- 0
updated Apr 26, 2019
Change process selector

BICF/Astrocyte/cellranger_count#18 · created Mar 25, 2019 by Gervaise Henry v1.1.0 enhancement
- CLOSED
- 1
- 1
updated Apr 26, 2019
New folders for all steps

BICF/Astrocyte/chipseq_analysis#33 · created Mar 12, 2019 by Venkat Malladi 1.0.0
- CLOSED
- 1
- 0
updated Mar 16, 2019
Memory

BICF/Astrocyte/chipseq_analysis#32 · created Mar 12, 2019 by Venkat Malladi 3.0.0 discussion
- 0
updated Jun 23, 2020
Develop CI

BICF/Astrocyte/cellranger_count#14 · created Mar 11, 2019 by Gervaise Henry v1.2.0 enhancement
- CLOSED
- 1
- 2
updated Aug 15, 2019
skip motif search and diff bind

BICF/Astrocyte/chipseq_analysis#31 · created Mar 08, 2019 by Holly Ruess 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Mar 12, 2019
Add ability to count additional features

BICF/Astrocyte/cellranger_count#10 · created Mar 04, 2019 by Gervaise Henry Pending To Do enhancement
- 0
updated Jun 21, 2020
Re-direct output

BICF/Astrocyte/atacseq_analysis#5 · created Feb 20, 2019 by Holly Ruess Version 2.0 critical
- CLOSED
- 0
updated Jan 02, 2020

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