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  • BICF
  • Issues

  • Open 76
  • Closed 273
  • All 349
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking
  • skip motif search and diff bind
    BICF/Astrocyte/chipseq_analysis#31 · created Mar 08, 2019 by Holly Ruess   1.0.0   enhancement
    • CLOSED
    • 1
    • 0
    updated Mar 12, 2019
  • Re-direct output
    BICF/Astrocyte/atacseq_analysis#5 · created Feb 20, 2019 by Holly Ruess   Version 2.0   critical
    • CLOSED
    • 0
    updated Jan 02, 2020
  • xcor.py, --random-source fails if file is too small
    BICF/Astrocyte/chipseq_analysis#30 · created Feb 12, 2019 by Holly Ruess   1.1.0
    • CLOSED
    • 1
    • 0
    updated Mar 15, 2020
  • Add MultiQC
    BICF/Astrocyte/cellranger_count#5 · created Feb 06, 2019 by Gervaise Henry   v1.1.0   enhancement
    • CLOSED
    • 3
    • 1
    updated Aug 15, 2019
  • add plotProfile
    BICF/Astrocyte/chipseq_analysis#29 · created Jan 23, 2019 by Holly Ruess   1.1.0   enhancement
    • CLOSED
    • 1
    • 0
    updated Mar 15, 2020
  • Last 3 steps don't go into user defined output directory
    BICF/Astrocyte/chipseq_analysis#28 · created Jan 23, 2019 by Holly Ruess   1.0.0   bug
    • CLOSED
    • 0
    updated Apr 03, 2019
  • Add Pearson correlation, and make Spearman and Pearson Corr Plots pdf
    BICF/Astrocyte/chipseq_analysis#27 · created Jan 16, 2019 by Holly Ruess   1.0.0
    • CLOSED
    • 1
    updated Jan 31, 2019
  • callPeaksMACS exits when data is bad
    BICF/Astrocyte/chipseq_analysis#26 · created Jan 15, 2019 by Holly Ruess   1.1.0   bug
    • CLOSED
    • 1
    • 3
    updated Mar 15, 2020
  • experimentQC plots are empty in PE
    BICF/Astrocyte/chipseq_analysis#25 · created Jan 03, 2019 by Holly Ruess   1.0.0   bug
    • CLOSED
    • 0
    updated Jan 06, 2019
  • Test Astrocyte
    BICF/Astrocyte/chipseq_analysis#24 · created Dec 27, 2018 by Venkat Malladi   1.0.0   critical
    • CLOSED
    • 1
    • 0
    updated Apr 21, 2019
  • Use SampleIds/ Experiment Id as file names throughtout pipeline
    BICF/Astrocyte/chipseq_analysis#23 · created Dec 26, 2018 by Venkat Malladi   1.0.0   critical
    • CLOSED
    • 1
    • 0
    updated Mar 10, 2019
  • Add defined output folder
    BICF/Astrocyte/chipseq_analysis#22 · created Dec 26, 2018 by Venkat Malladi   1.0.0   enhancement
    • CLOSED
    • 0
    updated Jan 06, 2019
  • Output software versions and methods and references
    BICF/Astrocyte/chipseq_analysis#21 · created Dec 26, 2018 by Venkat Malladi   1.0.0   enhancement
    • CLOSED
    • 1
    • 1
    updated Apr 18, 2019
  • Add multiqc summary of data
    BICF/Astrocyte/chipseq_analysis#19 · created Aug 11, 2018 by Venkat Malladi   1.0.0   enhancement
    • CLOSED
    • 1
    • 2
    updated Apr 21, 2019
  • broken link in documentation
    BICF/Astrocyte/chipseq_analysis#18 · created Jun 13, 2018 by Spencer Barnes   1.0.0   bug
    • CLOSED
    • 1
    updated Jan 05, 2019
  • pool and pseudoreplicate
    BICF/Astrocyte/atacseq_analysis#4 · created May 11, 2018 by Spencer Barnes   Version 2.0   critical
    • CLOSED
    • 1
    updated Jan 02, 2020
  • mitochondrial chromosome reads
    BICF/Astrocyte/atacseq_analysis#3 · created May 11, 2018 by Spencer Barnes   Version 2.0   critical
    • CLOSED
    • 0
    updated Jan 02, 2020
  • deeptools version 3 error
    BICF/Astrocyte/atacseq_analysis#2 · created May 11, 2018 by Spencer Barnes   Version 2.0   enhancment
    • CLOSED
    • 1
    updated Jan 02, 2020
  • Add in current chip-analysis functionality.
    BICF/Astrocyte/chipseq_analysis#15 · created Nov 20, 2017 by Venkat Malladi   1.0.0   enhancement
    • CLOSED
    • 2
    • 1
    updated Jan 11, 2019
  • Pool and Pseudoreplication
    BICF/Astrocyte/chipseq_analysis#13 · created Oct 25, 2017 by Venkat Malladi   1.0.0   enhancement
    • CLOSED
    • 1
    • 0
    updated Oct 30, 2017
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