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BICF
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Blocking
skip motif search and diff bind
BICF/Astrocyte/chipseq_analysis#31
· created
Mar 08, 2019
by
Holly Ruess
1.0.0
enhancement
CLOSED
1
0
updated
Mar 12, 2019
Re-direct output
BICF/Astrocyte/atacseq_analysis#5
· created
Feb 20, 2019
by
Holly Ruess
Version 2.0
critical
CLOSED
0
updated
Jan 02, 2020
xcor.py, --random-source fails if file is too small
BICF/Astrocyte/chipseq_analysis#30
· created
Feb 12, 2019
by
Holly Ruess
1.1.0
CLOSED
1
0
updated
Mar 15, 2020
Add MultiQC
BICF/Astrocyte/cellranger_count#5
· created
Feb 06, 2019
by
Gervaise Henry
v1.1.0
enhancement
CLOSED
3
1
updated
Aug 15, 2019
add plotProfile
BICF/Astrocyte/chipseq_analysis#29
· created
Jan 23, 2019
by
Holly Ruess
1.1.0
enhancement
CLOSED
1
0
updated
Mar 15, 2020
Last 3 steps don't go into user defined output directory
BICF/Astrocyte/chipseq_analysis#28
· created
Jan 23, 2019
by
Holly Ruess
1.0.0
bug
CLOSED
0
updated
Apr 03, 2019
Add Pearson correlation, and make Spearman and Pearson Corr Plots pdf
BICF/Astrocyte/chipseq_analysis#27
· created
Jan 16, 2019
by
Holly Ruess
1.0.0
CLOSED
1
updated
Jan 31, 2019
callPeaksMACS exits when data is bad
BICF/Astrocyte/chipseq_analysis#26
· created
Jan 15, 2019
by
Holly Ruess
1.1.0
bug
CLOSED
1
3
updated
Mar 15, 2020
experimentQC plots are empty in PE
BICF/Astrocyte/chipseq_analysis#25
· created
Jan 03, 2019
by
Holly Ruess
1.0.0
bug
CLOSED
0
updated
Jan 06, 2019
Test Astrocyte
BICF/Astrocyte/chipseq_analysis#24
· created
Dec 27, 2018
by
Venkat Malladi
1.0.0
critical
CLOSED
1
0
updated
Apr 21, 2019
Use SampleIds/ Experiment Id as file names throughtout pipeline
BICF/Astrocyte/chipseq_analysis#23
· created
Dec 26, 2018
by
Venkat Malladi
1.0.0
critical
CLOSED
1
0
updated
Mar 10, 2019
Add defined output folder
BICF/Astrocyte/chipseq_analysis#22
· created
Dec 26, 2018
by
Venkat Malladi
1.0.0
enhancement
CLOSED
0
updated
Jan 06, 2019
Output software versions and methods and references
BICF/Astrocyte/chipseq_analysis#21
· created
Dec 26, 2018
by
Venkat Malladi
1.0.0
enhancement
CLOSED
1
1
updated
Apr 18, 2019
Add multiqc summary of data
BICF/Astrocyte/chipseq_analysis#19
· created
Aug 11, 2018
by
Venkat Malladi
1.0.0
enhancement
CLOSED
1
2
updated
Apr 21, 2019
broken link in documentation
BICF/Astrocyte/chipseq_analysis#18
· created
Jun 13, 2018
by
Spencer Barnes
1.0.0
bug
CLOSED
1
updated
Jan 05, 2019
pool and pseudoreplicate
BICF/Astrocyte/atacseq_analysis#4
· created
May 11, 2018
by
Spencer Barnes
Version 2.0
critical
CLOSED
1
updated
Jan 02, 2020
mitochondrial chromosome reads
BICF/Astrocyte/atacseq_analysis#3
· created
May 11, 2018
by
Spencer Barnes
Version 2.0
critical
CLOSED
0
updated
Jan 02, 2020
deeptools version 3 error
BICF/Astrocyte/atacseq_analysis#2
· created
May 11, 2018
by
Spencer Barnes
Version 2.0
enhancment
CLOSED
1
updated
Jan 02, 2020
Add in current chip-analysis functionality.
BICF/Astrocyte/chipseq_analysis#15
· created
Nov 20, 2017
by
Venkat Malladi
1.0.0
enhancement
CLOSED
2
1
updated
Jan 11, 2019
Pool and Pseudoreplication
BICF/Astrocyte/chipseq_analysis#13
· created
Oct 25, 2017
by
Venkat Malladi
1.0.0
enhancement
CLOSED
1
0
updated
Oct 30, 2017
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