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BICF
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BICF
Issues

Open 76
Closed 273
All 349

Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking

BUG: Cannot handle multiple runs

BICF/Astrocyte/sra_pipeline#16 · created Apr 03, 2020 by Gervaise Henry To Do
- CLOSED
- 1
- 2
updated Jun 01, 2020
Remove qc_fastq.py

BICF/Astrocyte/chipseq_analysis#11 · created Oct 17, 2017 by Venkat Malladi 1.0.0 bug
- CLOSED
- 1
- 0
updated Oct 18, 2017
Speed up fastqc and/or multiqc

BICF/Astrocyte/cellranger_mkfastq#11 · created Apr 10, 2019 by Gervaise Henry Astrocyte Production (v1.0.0) enhancement
- CLOSED
- 0
updated Apr 12, 2019
Statanal fail at heatmaps

BICF/Astrocyte/rnaseq#11 · created Apr 19, 2019 by Holly Ruess
- CLOSED
- 1
- 0
updated Apr 26, 2019
Change output from png to pdf

BICF/Astrocyte/atacseq_analysis#11 · created May 10, 2019 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 0
updated Jan 02, 2020
Metastasis table

BICF/KCE/kce_etl#11 · created Jul 09, 2019 by Venkat Malladi rejected
- CLOSED
- 1
updated Apr 25, 2020
Onboarding document fails to provide BICF Redmine URL

onboarding#11 · created Dec 02, 2019 by Daniel Moser
- CLOSED
- 1
- 1
- 1
updated Dec 24, 2019
MultiConfig

BICF/Astrocyte/sra_pipeline#11 · created Dec 03, 2019 by Jeremy Mathews
- CLOSED
- 1
updated Apr 04, 2020
Make param.genomeLocation have full path

BICF/Astrocyte/cellranger_count#12 · created Mar 07, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 2
- 0
updated Mar 10, 2019
Make tagAlign files

BICF/Astrocyte/chipseq_analysis#12 · created Oct 18, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Oct 23, 2017
Move software version report to the bottom

BICF/Astrocyte/cellranger_mkfastq#12 · created Apr 12, 2019 by Gervaise Henry Astrocyte Production (v1.0.0) enhancement suggestion
- CLOSED
- 1
- 0
updated Apr 12, 2019
Remove unnecessary columns from design file

BICF/Astrocyte/atacseq_analysis#12 · created Dec 03, 2019 by Holly Ruess Version 2.0
- CLOSED
- 2
- 0
updated Dec 04, 2019
TOC - Fee Structure

onboarding#12 · created Dec 24, 2019 by Venkat Malladi
- CLOSED
- 1
- 0
updated Dec 24, 2019
Update to Singularity Image 2.0.0 compatability.

BICF/Astrocyte/sra_pipeline#12 · created Jan 16, 2020 by Jonathan Gesell Singularity 2.0.0 Compatability Updates
- CLOSED
- 2
- 0
updated Feb 05, 2020
Add params from biohpc.config into main.nf

BICF/Astrocyte/cellranger_count#13 · created Mar 07, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) bug
- CLOSED
- 1
- 2
updated Mar 22, 2019
Pool and Pseudoreplication

BICF/Astrocyte/chipseq_analysis#13 · created Oct 25, 2017 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Oct 30, 2017
Handle multi-flowcells in fastqc and multiqc

BICF/Astrocyte/cellranger_mkfastq#13 · created Apr 17, 2019 by Gervaise Henry v1.1.0 bug
- CLOSED
- 1
- 0
updated Apr 26, 2019
update check design file

BICF/Astrocyte/atacseq_analysis#13 · created Dec 06, 2019 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 1
- 0
updated Dec 09, 2019
Update Hourly Help Desk for Subtask

onboarding#13 · created Jan 03, 2020 by Venkat Malladi
- CLOSED
- 1
- 0
updated Feb 26, 2020
Develop CI

BICF/Astrocyte/cellranger_count#14 · created Mar 11, 2019 by Gervaise Henry v1.2.0 enhancement
- CLOSED
- 1
- 2
updated Aug 15, 2019

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