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BICF
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BICF
Issues

Open 76
Closed 273
All 349

Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking

Surgery Table

BICF/KCE/kce_etl#9 · created Jul 09, 2019 by Venkat Malladi
- CLOSED
- 1
- 0
updated Jan 28, 2020
Update to bicfbase:1.1

BICF/Astrocyte/sra_pipeline#9 · created Sep 09, 2019 by Jonathan Gesell Updates
- CLOSED
- 1
- 0
updated Sep 10, 2019
Add Mingjie

onboarding#9 · created Sep 26, 2019 by Venkat Malladi
- CLOSED
- 1
- 0
updated Sep 26, 2019
Add in grouping variable

BICF/Astrocyte/chipseq_analysis#10 · created Oct 11, 2017 by Venkat Malladi 1.0.0 bug
- CLOSED
- 1
- 0
updated Oct 11, 2017
workflow/process_scripts empty after cloning

BICF/Astrocyte/rnaseq#10 · created Nov 02, 2018 by Holly Ruess
- CLOSED
- 1
updated Nov 02, 2018
Add references to multiqc report

BICF/Astrocyte/cellranger_mkfastq#10 · created Apr 10, 2019 by Gervaise Henry v1.2.0 enhancement
- CLOSED
- 2
- 0
updated Jul 22, 2019
Update script to incorrpoarte chagnes from ChiP_seq pipeline

BICF/Astrocyte/atacseq_analysis#10 · created May 02, 2019 by Venkat Malladi Version 1.0 critical
- CLOSED
- 1
updated Dec 03, 2019
Diagnosis TR table

BICF/KCE/kce_etl#10 · created Jul 09, 2019 by Venkat Malladi
- 0
updated Jul 09, 2019
Add Krishna

onboarding#10 · created Nov 15, 2019 by Venkat Malladi
- CLOSED
- 1
- 3
updated Nov 16, 2019
File vs Channel

BICF/Astrocyte/sra_pipeline#10 · created Dec 03, 2019 by Jeremy Mathews To Do
- 1
- 3
updated Aug 27, 2020
Add parameter for 10x kit version

BICF/Astrocyte/cellranger_count#11 · created Mar 04, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 1
- 0
updated Mar 05, 2019
nullDataError

BICF/Astrocyte/sra_pipeline#13 · created Feb 06, 2020 by Jonathan Gesell Bug fixes To Do
- 0
updated Apr 20, 2020
updateUnitTests

BICF/Astrocyte/sra_pipeline#14 · created Feb 06, 2020 by Jonathan Gesell Singularity 2.0.0 Compatability To Do Updates
- CLOSED
- 1
- 1
updated Jun 17, 2020
Convert SOLID sequencing to basecall

BICF/Astrocyte/sra_pipeline#15 · created Mar 26, 2020 by Venkat Malladi Bug fixes To Do error correction
- CLOSED
- 1
- 0
updated Jun 01, 2020
BUG: Cannot handle multiple runs

BICF/Astrocyte/sra_pipeline#16 · created Apr 03, 2020 by Gervaise Henry To Do
- CLOSED
- 1
- 2
updated Jun 01, 2020
Remove qc_fastq.py

BICF/Astrocyte/chipseq_analysis#11 · created Oct 17, 2017 by Venkat Malladi 1.0.0 bug
- CLOSED
- 1
- 0
updated Oct 18, 2017
Speed up fastqc and/or multiqc

BICF/Astrocyte/cellranger_mkfastq#11 · created Apr 10, 2019 by Gervaise Henry Astrocyte Production (v1.0.0) enhancement
- CLOSED
- 0
updated Apr 12, 2019
Statanal fail at heatmaps

BICF/Astrocyte/rnaseq#11 · created Apr 19, 2019 by Holly Ruess
- CLOSED
- 1
- 0
updated Apr 26, 2019
Change output from png to pdf

BICF/Astrocyte/atacseq_analysis#11 · created May 10, 2019 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 0
updated Jan 02, 2020
Metastasis table

BICF/KCE/kce_etl#11 · created Jul 09, 2019 by Venkat Malladi rejected
- CLOSED
- 1
updated Apr 25, 2020

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