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  • Issues

  • Open 76
  • Closed 273
  • All 349
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking
  • Add base mask
    BICF/Astrocyte/cellranger_mkfastq#39 · created Mar 20, 2020 by Gervaise Henry   v2.1.5   Doing enhancement
    • CLOSED
    • 1
    • 2
    updated Jun 20, 2020
  • Ignore dual index
    BICF/Astrocyte/cellranger_mkfastq#38 · created Mar 19, 2020 by Gervaise Henry   v2.1.5   Doing critical enhancement
    • CLOSED
    • 1
    • 1
    updated Jun 20, 2020
  • Update to Astrocyte 0.2.0
    BICF/Astrocyte/chipseq_analysis#77 · created Mar 15, 2020 by Venkat Malladi   1.1.0   Test
    • CLOSED
    • 1
    • 0
    updated Mar 21, 2020
  • update version of nextflow
    BICF/Astrocyte/atacseq_analysis#36 · created Feb 26, 2020 by Holly Ruess   Version 2.1.0   critical enhancment
    • 0
    updated Jun 23, 2020
  • Add ulimit to cellranger process
    BICF/Astrocyte/cellranger_mkfastq#37 · created Feb 21, 2020 by Gervaise Henry   v2.1.5   Doing bug confirmed critical
    • CLOSED
    • 1
    • 1
    updated Jun 20, 2020
  • BUG: thread error on Astrocyte
    BICF/Astrocyte/cellranger_count#40 · created Feb 21, 2020 by Gervaise Henry   v2.1.1   bug confirmed critical
    • CLOSED
    • 1
    • 0
    updated Apr 20, 2020
  • Update version of multiqc
    BICF/Astrocyte/chipseq_analysis#76 · created Feb 10, 2020 by Holly Ruess   1.1.0   bug enhancement
    • CLOSED
    • 1
    updated Mar 15, 2020
  • updateUnitTests
    BICF/Astrocyte/sra_pipeline#14 · created Feb 06, 2020 by Jonathan Gesell   Singularity 2.0.0 Compatability   To Do Updates
    • CLOSED
    • 1
    • 1
    updated Jun 17, 2020
  • nullDataError
    BICF/Astrocyte/sra_pipeline#13 · created Feb 06, 2020 by Jonathan Gesell   Bug fixes To Do
    • 0
    updated Apr 20, 2020
  • Rename Plot profile to be consistent with naming
    BICF/Astrocyte/chipseq_analysis#75 · created Feb 05, 2020 by Venkat Malladi   1.1.0   Test
    • CLOSED
    • 1
    • 0
    updated Apr 21, 2020
  • Annotepeaks
    BICF/Astrocyte/chipseq_analysis#74 · created Feb 03, 2020 by Venkat Malladi   2.0.0   Doing enhancement
    • 1
    updated Jun 23, 2020
  • Add tests surgery
    BICF/KCE/kce_etl#26 · created Jan 28, 2020 by Venkat Malladi
    • 1
    updated Feb 07, 2020
  • Make a link in redmine.md
    onboarding#15 · created Jan 23, 2020 by Venkat Malladi
    • CLOSED
    • 1
    updated Jan 24, 2020
  • Update to Singularity Image 2.0.0 compatability.
    BICF/Astrocyte/sra_pipeline#12 · created Jan 16, 2020 by Jonathan Gesell   Singularity 2.0.0 Compatability   Updates
    • CLOSED
    • 2
    • 0
    updated Feb 05, 2020
  • Change to 256 only if job fails
    BICF/Astrocyte/atacseq_analysis#35 · created Jan 09, 2020 by Holly Ruess   Version 2.1.0   enhancment
    • 0
    updated Jun 23, 2020
  • Diff Peak analysis
    BICF/Astrocyte/atacseq_analysis#34 · created Jan 09, 2020 by Holly Ruess   Version 2.1.0   enhancment
    • 0
    updated Jun 23, 2020
  • Motif search in peaks
    BICF/Astrocyte/atacseq_analysis#33 · created Jan 09, 2020 by Holly Ruess   Version 2.1.0   enhancment
    • 0
    updated Jun 23, 2020
  • Annotate peaks
    BICF/Astrocyte/atacseq_analysis#32 · created Jan 09, 2020 by Holly Ruess   Version 2.0   enhancment
    • CLOSED
    • 1
    • 0
    updated Jun 11, 2020
  • Blacklist of regions
    BICF/Astrocyte/atacseq_analysis#31 · created Jan 09, 2020 by Holly Ruess   Version 2.0   enhancment
    • CLOSED
    • 1
    • 0
    updated Jun 09, 2020
  • TSS enrichment score
    BICF/Astrocyte/atacseq_analysis#30 · created Jan 09, 2020 by Holly Ruess   Version 2.0   enhancment
    • CLOSED
    • 2
    • 0
    updated May 28, 2020
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