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BICF
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BICF
Issues

Open 76
Closed 273
All 349

Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking

Create design file for cellranger_count pipeline

BICF/Astrocyte/cellranger_mkfastq#8 · created Apr 09, 2019 by Gervaise Henry v1.2.0 enhancement
- CLOSED
- 1
- 0
updated Jul 22, 2019
Make ATAC-seq pipeline generalizibe for Open Chromatin

BICF/Astrocyte/atacseq_analysis#8 · created May 02, 2019 by Venkat Malladi Version 1.0 enhancment
- CLOSED
- 1
updated Dec 03, 2019
Biopsy

BICF/KCE/kce_etl#8 · created Jul 09, 2019 by Venkat Malladi
- CLOSED
- 1
updated Aug 12, 2021
Add in Single Cell working Group Meeting

onboarding#8 · created Sep 05, 2019 by Venkat Malladi
- CLOSED
- 0
updated Sep 05, 2019
Azure Compatability

BICF/Astrocyte/sra_pipeline#8 · created Sep 09, 2019 by Jonathan Gesell Azure Functionality testing
- CLOSED
- 1
updated Aug 27, 2020
Add cellranger references version 3.0.0 as options

BICF/Astrocyte/cellranger_count#9 · created Mar 04, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 1
- 0
updated Mar 05, 2019
DEA Skip

BICF/Astrocyte/rnaseq#9 · created May 15, 2018 by Jonathan Gesell
- CLOSED
- 1
updated May 16, 2018
Split multiqc fastqc by r1/r2/i1

BICF/Astrocyte/cellranger_mkfastq#9 · created Apr 09, 2019 by Gervaise Henry Astrocyte Production (v1.0.0) enhancement
- CLOSED
- 1
- 0
updated Apr 12, 2019
Add in references and version used in script

BICF/Astrocyte/atacseq_analysis#9 · created May 02, 2019 by Venkat Malladi Version 2.0 critical
- CLOSED
- 1
updated May 28, 2020
Surgery Table

BICF/KCE/kce_etl#9 · created Jul 09, 2019 by Venkat Malladi
- CLOSED
- 1
- 0
updated Jan 28, 2020
Update to bicfbase:1.1

BICF/Astrocyte/sra_pipeline#9 · created Sep 09, 2019 by Jonathan Gesell Updates
- CLOSED
- 1
- 0
updated Sep 10, 2019
Add Mingjie

onboarding#9 · created Sep 26, 2019 by Venkat Malladi
- CLOSED
- 1
- 0
updated Sep 26, 2019
Add in grouping variable

BICF/Astrocyte/chipseq_analysis#10 · created Oct 11, 2017 by Venkat Malladi 1.0.0 bug
- CLOSED
- 1
- 0
updated Oct 11, 2017
workflow/process_scripts empty after cloning

BICF/Astrocyte/rnaseq#10 · created Nov 02, 2018 by Holly Ruess
- CLOSED
- 1
updated Nov 02, 2018
Add references to multiqc report

BICF/Astrocyte/cellranger_mkfastq#10 · created Apr 10, 2019 by Gervaise Henry v1.2.0 enhancement
- CLOSED
- 2
- 0
updated Jul 22, 2019
Update script to incorrpoarte chagnes from ChiP_seq pipeline

BICF/Astrocyte/atacseq_analysis#10 · created May 02, 2019 by Venkat Malladi Version 1.0 critical
- CLOSED
- 1
updated Dec 03, 2019
Add Krishna

onboarding#10 · created Nov 15, 2019 by Venkat Malladi
- CLOSED
- 1
- 3
updated Nov 16, 2019
Add parameter for 10x kit version

BICF/Astrocyte/cellranger_count#11 · created Mar 04, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 1
- 0
updated Mar 05, 2019
updateUnitTests

BICF/Astrocyte/sra_pipeline#14 · created Feb 06, 2020 by Jonathan Gesell Singularity 2.0.0 Compatability To Do Updates
- CLOSED
- 1
- 1
updated Jun 17, 2020
Convert SOLID sequencing to basecall

BICF/Astrocyte/sra_pipeline#15 · created Mar 26, 2020 by Venkat Malladi Bug fixes To Do error correction
- CLOSED
- 1
- 0
updated Jun 01, 2020

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