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BICF
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Manual
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Title
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Blocking
Create design file for cellranger_count pipeline
BICF/Astrocyte/cellranger_mkfastq#8
· created
Apr 09, 2019
by
Gervaise Henry
v1.2.0
enhancement
CLOSED
1
0
updated
Jul 22, 2019
Make ATAC-seq pipeline generalizibe for Open Chromatin
BICF/Astrocyte/atacseq_analysis#8
· created
May 02, 2019
by
Venkat Malladi
Version 1.0
enhancment
CLOSED
1
updated
Dec 03, 2019
Biopsy
BICF/KCE/kce_etl#8
· created
Jul 09, 2019
by
Venkat Malladi
CLOSED
1
updated
Aug 12, 2021
Add in Single Cell working Group Meeting
onboarding#8
· created
Sep 05, 2019
by
Venkat Malladi
CLOSED
0
updated
Sep 05, 2019
Azure Compatability
BICF/Astrocyte/sra_pipeline#8
· created
Sep 09, 2019
by
Jonathan Gesell
Azure Functionality
testing
CLOSED
1
updated
Aug 27, 2020
Add cellranger references version 3.0.0 as options
BICF/Astrocyte/cellranger_count#9
· created
Mar 04, 2019
by
Gervaise Henry
Put on Astrocyte Production (1.0.0)
enhancement
CLOSED
1
0
updated
Mar 05, 2019
DEA Skip
BICF/Astrocyte/rnaseq#9
· created
May 15, 2018
by
Jonathan Gesell
CLOSED
1
updated
May 16, 2018
Split multiqc fastqc by r1/r2/i1
BICF/Astrocyte/cellranger_mkfastq#9
· created
Apr 09, 2019
by
Gervaise Henry
Astrocyte Production (v1.0.0)
enhancement
CLOSED
1
0
updated
Apr 12, 2019
Add in references and version used in script
BICF/Astrocyte/atacseq_analysis#9
· created
May 02, 2019
by
Venkat Malladi
Version 2.0
critical
CLOSED
1
updated
May 28, 2020
Surgery Table
BICF/KCE/kce_etl#9
· created
Jul 09, 2019
by
Venkat Malladi
CLOSED
1
0
updated
Jan 28, 2020
Update to bicfbase:1.1
BICF/Astrocyte/sra_pipeline#9
· created
Sep 09, 2019
by
Jonathan Gesell
Updates
CLOSED
1
0
updated
Sep 10, 2019
Add Mingjie
onboarding#9
· created
Sep 26, 2019
by
Venkat Malladi
CLOSED
1
0
updated
Sep 26, 2019
Add in grouping variable
BICF/Astrocyte/chipseq_analysis#10
· created
Oct 11, 2017
by
Venkat Malladi
1.0.0
bug
CLOSED
1
0
updated
Oct 11, 2017
workflow/process_scripts empty after cloning
BICF/Astrocyte/rnaseq#10
· created
Nov 02, 2018
by
Holly Ruess
CLOSED
1
updated
Nov 02, 2018
Add references to multiqc report
BICF/Astrocyte/cellranger_mkfastq#10
· created
Apr 10, 2019
by
Gervaise Henry
v1.2.0
enhancement
CLOSED
2
0
updated
Jul 22, 2019
Update script to incorrpoarte chagnes from ChiP_seq pipeline
BICF/Astrocyte/atacseq_analysis#10
· created
May 02, 2019
by
Venkat Malladi
Version 1.0
critical
CLOSED
1
updated
Dec 03, 2019
Add Krishna
onboarding#10
· created
Nov 15, 2019
by
Venkat Malladi
CLOSED
1
3
updated
Nov 16, 2019
Add parameter for 10x kit version
BICF/Astrocyte/cellranger_count#11
· created
Mar 04, 2019
by
Gervaise Henry
Put on Astrocyte Production (1.0.0)
enhancement
CLOSED
1
0
updated
Mar 05, 2019
updateUnitTests
BICF/Astrocyte/sra_pipeline#14
· created
Feb 06, 2020
by
Jonathan Gesell
Singularity 2.0.0 Compatability
To Do
Updates
CLOSED
1
1
updated
Jun 17, 2020
Convert SOLID sequencing to basecall
BICF/Astrocyte/sra_pipeline#15
· created
Mar 26, 2020
by
Venkat Malladi
Bug fixes
To Do
error correction
CLOSED
1
0
updated
Jun 01, 2020
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