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  • BICF
  • Issues

  • Open 76
  • Closed 273
  • All 349
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking
  • Create design file for cellranger_count pipeline
    BICF/Astrocyte/cellranger_mkfastq#8 · created Apr 09, 2019 by Gervaise Henry   v1.2.0   enhancement
    • CLOSED
    • 1
    • 0
    updated Jul 22, 2019
  • Make ATAC-seq pipeline generalizibe for Open Chromatin
    BICF/Astrocyte/atacseq_analysis#8 · created May 02, 2019 by Venkat Malladi   Version 1.0   enhancment
    • CLOSED
    • 1
    updated Dec 03, 2019
  • Biopsy
    BICF/KCE/kce_etl#8 · created Jul 09, 2019 by Venkat Malladi
    • CLOSED
    • 1
    updated Aug 12, 2021
  • Add in Single Cell working Group Meeting
    onboarding#8 · created Sep 05, 2019 by Venkat Malladi
    • CLOSED
    • 0
    updated Sep 05, 2019
  • Azure Compatability
    BICF/Astrocyte/sra_pipeline#8 · created Sep 09, 2019 by Jonathan Gesell   Azure Functionality   testing
    • CLOSED
    • 1
    updated Aug 27, 2020
  • Add cellranger references version 3.0.0 as options
    BICF/Astrocyte/cellranger_count#9 · created Mar 04, 2019 by Gervaise Henry   Put on Astrocyte Production (1.0.0)   enhancement
    • CLOSED
    • 1
    • 0
    updated Mar 05, 2019
  • DEA Skip
    BICF/Astrocyte/rnaseq#9 · created May 15, 2018 by Jonathan Gesell
    • CLOSED
    • 1
    updated May 16, 2018
  • Split multiqc fastqc by r1/r2/i1
    BICF/Astrocyte/cellranger_mkfastq#9 · created Apr 09, 2019 by Gervaise Henry   Astrocyte Production (v1.0.0)   enhancement
    • CLOSED
    • 1
    • 0
    updated Apr 12, 2019
  • Add in references and version used in script
    BICF/Astrocyte/atacseq_analysis#9 · created May 02, 2019 by Venkat Malladi   Version 2.0   critical
    • CLOSED
    • 1
    updated May 28, 2020
  • Surgery Table
    BICF/KCE/kce_etl#9 · created Jul 09, 2019 by Venkat Malladi
    • CLOSED
    • 1
    • 0
    updated Jan 28, 2020
  • Update to bicfbase:1.1
    BICF/Astrocyte/sra_pipeline#9 · created Sep 09, 2019 by Jonathan Gesell   Updates
    • CLOSED
    • 1
    • 0
    updated Sep 10, 2019
  • Add Mingjie
    onboarding#9 · created Sep 26, 2019 by Venkat Malladi
    • CLOSED
    • 1
    • 0
    updated Sep 26, 2019
  • Add in grouping variable
    BICF/Astrocyte/chipseq_analysis#10 · created Oct 11, 2017 by Venkat Malladi   1.0.0   bug
    • CLOSED
    • 1
    • 0
    updated Oct 11, 2017
  • workflow/process_scripts empty after cloning
    BICF/Astrocyte/rnaseq#10 · created Nov 02, 2018 by Holly Ruess
    • CLOSED
    • 1
    updated Nov 02, 2018
  • Add references to multiqc report
    BICF/Astrocyte/cellranger_mkfastq#10 · created Apr 10, 2019 by Gervaise Henry   v1.2.0   enhancement
    • CLOSED
    • 2
    • 0
    updated Jul 22, 2019
  • Update script to incorrpoarte chagnes from ChiP_seq pipeline
    BICF/Astrocyte/atacseq_analysis#10 · created May 02, 2019 by Venkat Malladi   Version 1.0   critical
    • CLOSED
    • 1
    updated Dec 03, 2019
  • Add Krishna
    onboarding#10 · created Nov 15, 2019 by Venkat Malladi
    • CLOSED
    • 1
    • 3
    updated Nov 16, 2019
  • Add parameter for 10x kit version
    BICF/Astrocyte/cellranger_count#11 · created Mar 04, 2019 by Gervaise Henry   Put on Astrocyte Production (1.0.0)   enhancement
    • CLOSED
    • 1
    • 0
    updated Mar 05, 2019
  • updateUnitTests
    BICF/Astrocyte/sra_pipeline#14 · created Feb 06, 2020 by Jonathan Gesell   Singularity 2.0.0 Compatability   To Do Updates
    • CLOSED
    • 1
    • 1
    updated Jun 17, 2020
  • Convert SOLID sequencing to basecall
    BICF/Astrocyte/sra_pipeline#15 · created Mar 26, 2020 by Venkat Malladi   Bug fixes To Do error correction
    • CLOSED
    • 1
    • 0
    updated Jun 01, 2020
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