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  • BICF
  • Issues

  • Open 76
  • Closed 273
  • All 349
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking
  • Change to 256 only if job fails
    BICF/Astrocyte/atacseq_analysis#35 · created Jan 09, 2020 by Holly Ruess   Version 2.1.0   enhancment
    • 0
    updated Jun 23, 2020
  • update version of nextflow
    BICF/Astrocyte/atacseq_analysis#36 · created Feb 26, 2020 by Holly Ruess   Version 2.1.0   critical enhancment
    • 0
    updated Jun 23, 2020
  • Memory
    BICF/Astrocyte/chipseq_analysis#32 · created Mar 12, 2019 by Venkat Malladi   3.0.0   discussion
    • 0
    updated Jun 23, 2020
  • Containerization
    BICF/Astrocyte/chipseq_analysis#64 · created Sep 12, 2019 by Jonathan Gesell   3.0.0   To Do
    • 0
    updated Jun 23, 2020
  • add checks to determine if fastq files are in proper format and not truncated
    BICF/Astrocyte/chipseq_analysis#69 · created Oct 30, 2019 by Spencer Barnes   2.0.0   To Do
    • 0
    updated Jun 23, 2020
  • Make both astrocyte compatable and other cluster compatable
    BICF/Astrocyte/chipseq_analysis#60 · created Jul 10, 2019 by Holly Ruess   3.0.0   To Do enhancement
    • 0
    updated Jun 23, 2020
  • diffbind design file error
    BICF/Astrocyte/chipseq_analysis#44 · created May 09, 2019 by Spencer Barnes   2.0.0   To Do bug discussion
    • 1
    updated Jun 23, 2020
  • Optimizations
    BICF/Astrocyte/chipseq_analysis#39 · created Apr 23, 2019 by Jonathan Gesell   3.0.0   discussion enhancement
    • 0
    updated Jun 23, 2020
  • Add in peak call with SPP and IDR
    BICF/Astrocyte/chipseq_analysis#14 · created Nov 14, 2017 by Venkat Malladi   2.0.0   To Do enhancement
    • 0
    updated Jun 23, 2020
  • Add in blacklist
    BICF/Astrocyte/chipseq_analysis#9 · created Oct 11, 2017 by Venkat Malladi   2.0.0   To Do enhancement
    • 0
    updated Jun 23, 2020
  • Annotepeaks
    BICF/Astrocyte/chipseq_analysis#74 · created Feb 03, 2020 by Venkat Malladi   2.0.0   Doing enhancement
    • 1
    updated Jun 23, 2020
  • Unique Experiment check
    BICF/Astrocyte/chipseq_analysis#83 · created May 24, 2020 by Venkat Malladi   2.0.0
    • 0
    updated Jun 23, 2020
  • Update multiqc version/references report
    BICF/Astrocyte/chipseq_analysis#85 · created Jun 23, 2020 by Gervaise Henry   2.0.0   To Do documentation enhancement
    • 0
    updated Jun 23, 2020
  • Add ability to count additional features
    BICF/Astrocyte/cellranger_count#10 · created Mar 04, 2019 by Gervaise Henry   Pending   To Do enhancement
    • 0
    updated Jun 21, 2020
  • Containerize Pipeline
    BICF/Astrocyte/sra_pipeline#24 · created Jun 17, 2020 by Jonathan Gesell   Azure Functionality   Doing Updates testing
    • 0
    updated Jun 17, 2020
  • Parallelize tests
    BICF/Astrocyte/sra_pipeline#22 · created Jun 16, 2020 by Jonathan Gesell   Doing Updates testing
    • 0
    updated Jun 16, 2020
  • Add concatination flag
    BICF/Astrocyte/sra_pipeline#19 · created Apr 30, 2020 by Jonathan Gesell   Astrocyte Functionality   Bug fixes Doing
    • 0
    updated Apr 30, 2020
  • Comparison Script
    BICF/KCE/kce_etl#28 · created Apr 25, 2020 by Venkat Malladi
    • 0
    updated Apr 25, 2020
  • New Beaker code
    BICF/KCE/kce_etl#27 · created Apr 25, 2020 by Venkat Malladi
    • 0
    updated Apr 25, 2020
  • nullDataError
    BICF/Astrocyte/sra_pipeline#13 · created Feb 06, 2020 by Jonathan Gesell   Bug fixes To Do
    • 0
    updated Apr 20, 2020
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