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  • BICF
  • Issues

  • Open 76
  • Closed 273
  • All 349
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking
  • Azure Compatability
    BICF/Astrocyte/sra_pipeline#8 · created Sep 09, 2019 by Jonathan Gesell   Azure Functionality   testing
    • CLOSED
    • 1
    updated Aug 27, 2020
  • Add flag for SAM instead of FastQ
    BICF/Astrocyte/sra_pipeline#27 · created Aug 26, 2020 by Jonathan Gesell   New Feature To Do Updates
    • 0
    updated Aug 26, 2020
  • Fix issue downloading and spliting for single cell data
    BICF/Astrocyte/sra_pipeline#26 · created Aug 17, 2020 by Venkat Malladi   Bug fixes
    • 2
    updated Aug 21, 2020
  • Version Zenodo
    BICF/Astrocyte/cellranger_count#51 · created Aug 14, 2020 by Gervaise Henry   2.2.0
    • CLOSED
    • 0
    updated Aug 15, 2020
  • Update doi in Readme
    BICF/Astrocyte/sra_pipeline#23 · created Jun 17, 2020 by Venkat Malladi
    • CLOSED
    • 1
    • 0
    updated Aug 15, 2020
  • Add Jon to author list   1 of 2 tasks completed
    BICF/Astrocyte/cellranger_count#47 · created Jun 22, 2020 by Gervaise Henry   2.2.0
    • CLOSED
    • 1
    updated Aug 14, 2020
  • Generate Raw RDS file
    BICF/Astrocyte/cellranger_count#50 · created Jul 31, 2020 by Venkat Malladi   2.2.0   Doing enhancement
    • CLOSED
    • 1
    • 2
    updated Aug 14, 2020
  • Annotation file is missing data
    BICF/Astrocyte/chipseq_analysis#87 · created Jul 06, 2020 by Venkat Malladi   2.0.0   bug
    • CLOSED
    • 1
    • 0
    updated Aug 07, 2020
  • create down-sampled test data
    BICF/Astrocyte/chipseq_analysis#88 · created Aug 07, 2020 by Spencer Barnes
    • 0
    updated Aug 07, 2020
  • Add test for astrocyte 0.3.1   0 of 3 tasks completed
    BICF/Astrocyte/cellranger_count#49 · created Jun 26, 2020 by Venkat Malladi   Wait bug
    • 0
    updated Aug 02, 2020
  • Shiny App   4 of 6 tasks completed
    BICF/Astrocyte/cellranger_count#35 · created Jul 31, 2019 by Gervaise Henry   Wait enhancement
    • 1
    updated Aug 02, 2020
  • Create output plots
    BICF/Astrocyte/cellranger_count#34 · created Jul 31, 2019 by Gervaise Henry   Wait enhancement
    • 0
    updated Aug 02, 2020
  • map reads fails to make bam files for long reads
    BICF/Astrocyte/atacseq_analysis#43 · created Jul 28, 2020 by Venkat Malladi   bug critical
    • CLOSED
    • 1
    • 1
    updated Jul 29, 2020
  • Update outside collaboration fee structure
    onboarding#21 · created Jul 14, 2020 by Venkat Malladi
    • CLOSED
    • 1
    • 0
    updated Jul 14, 2020
  • Genomics inventory
    BICF/KCE/kce_etl#16 · created Jul 09, 2019 by Venkat Malladi
    • 0
    updated Jul 01, 2020
  • Gender to sex
    BICF/KCE/kce_etl#29 · created Jul 01, 2020 by Venkat Malladi
    • CLOSED
    • 1
    updated Jul 01, 2020
  • Update multiqc version/references report
    BICF/Astrocyte/atacseq_analysis#41 · created Jun 23, 2020 by Gervaise Henry   Version 2.1.0   documentation enhancment
    • 1
    • 0
    updated Jul 01, 2020
  • Update to astrocyte 0.3.1
    BICF/Astrocyte/atacseq_analysis#42 · created Jun 26, 2020 by Venkat Malladi   Version 2.1.0
    • CLOSED
    • 0
    updated Jul 01, 2020
  • Update to astrocyte 0.3.1
    BICF/Astrocyte/chipseq_analysis#86 · created Jun 26, 2020 by Venkat Malladi   2.0.0
    • CLOSED
    • 0
    updated Jul 01, 2020
  • Track chip-seq usage
    BICF/Astrocyte/chipseq_analysis#84 · created Jun 19, 2020 by Venkat Malladi
    • CLOSED
    • 1
    • 1
    updated Jul 01, 2020
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