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BICF
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BICF
Issues

Open 76
Closed 273
All 349

Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking

Diff Peak analysis

BICF/Astrocyte/atacseq_analysis#34 · created Jan 09, 2020 by Holly Ruess Version 2.1.0 enhancment
- 0
updated Jun 23, 2020
Change to 256 only if job fails

BICF/Astrocyte/atacseq_analysis#35 · created Jan 09, 2020 by Holly Ruess Version 2.1.0 enhancment
- 0
updated Jun 23, 2020
update version of nextflow

BICF/Astrocyte/atacseq_analysis#36 · created Feb 26, 2020 by Holly Ruess Version 2.1.0 critical enhancment
- 0
updated Jun 23, 2020
Ref 2020-A not compatible with cellrangers < 4.0.0

BICF/Astrocyte/cellranger_count#53 · created Oct 16, 2020 by Gervaise Henry 3.0.0 To Do bug
- 1
updated Nov 20, 2020
Upgrade to cellranger 5.0.0

BICF/Astrocyte/cellranger_mkfastq#45 · created Nov 20, 2020 by Gervaise Henry 3.0.0 To Do
- 0
updated Nov 20, 2020
Add ability to handle dual index

BICF/Astrocyte/cellranger_mkfastq#44 · created Oct 30, 2020 by Gervaise Henry Pending To Do critical enhancement
- 4
updated Nov 03, 2020
Update multiqc version/references report

BICF/Astrocyte/cellranger_mkfastq#40 · created Jun 23, 2020 by Gervaise Henry Pending To Do documentation enhancement
- 0
updated Nov 03, 2020
Add output comments for untarBCL

BICF/Astrocyte/cellranger_mkfastq#43 · created Oct 29, 2020 by Gervaise Henry Pending To Do enhancement
- 1
updated Nov 03, 2020
Add test for astrocyte specific run of pipline 3 of 3 tasks completed

BICF/Astrocyte/cellranger_mkfastq#41 · created Jun 26, 2020 by Venkat Malladi To Do bug
- 1
- 0
updated Oct 30, 2020
Update multiqc version/references report

BICF/Astrocyte/atacseq_analysis#41 · created Jun 23, 2020 by Gervaise Henry Version 2.1.0 documentation enhancment
- 1
- 0
updated Jul 01, 2020
Add simple integration CI test

BICF/Astrocyte/cellranger_count#46 · created Apr 26, 2020 by Gervaise Henry 3.0.0 To Do enhancement
- 0
updated Nov 03, 2020
Update to Astocyte 0.4.0 4 of 4 tasks completed

BICF/Astrocyte/cellranger_mkfastq#42 · created Sep 07, 2020 by Venkat Malladi To Do
- 1
- 0
updated Sep 07, 2020
Add ability to count additional features

BICF/Astrocyte/cellranger_count#10 · created Mar 04, 2019 by Gervaise Henry Pending To Do enhancement
- 0
updated Jun 21, 2020
Generate QC Plot

BICF/Astrocyte/cellranger_count#52 · created Sep 18, 2020 by Jeremy Mathews
- 0
updated Sep 18, 2020
Filter reads increase memory

BICF/Astrocyte/chipseq_analysis#62 · created Jul 31, 2019 by Venkat Malladi 2.0.0 bug discussion
- 1
updated Dec 29, 2020
Memory

BICF/Astrocyte/chipseq_analysis#32 · created Mar 12, 2019 by Venkat Malladi 3.0.0 discussion
- 0
updated Jun 23, 2020
Optimizations

BICF/Astrocyte/chipseq_analysis#39 · created Apr 23, 2019 by Jonathan Gesell 3.0.0 discussion enhancement
- 0
updated Jun 23, 2020
Annotepeaks

BICF/Astrocyte/chipseq_analysis#74 · created Feb 03, 2020 by Venkat Malladi 2.0.0 Doing enhancement
- 1
updated Jun 23, 2020
Add in peak call with SPP and IDR

BICF/Astrocyte/chipseq_analysis#14 · created Nov 14, 2017 by Venkat Malladi 2.0.0 To Do enhancement
- 0
updated Jun 23, 2020
Containerization

BICF/Astrocyte/chipseq_analysis#64 · created Sep 12, 2019 by Jonathan Gesell 3.0.0 To Do
- 0
updated Jun 23, 2020

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