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  • BICF
  • Issues

  • Open 76
  • Closed 273
  • All 349
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking
  • diffbind design file error
    BICF/Astrocyte/chipseq_analysis#44 · created May 09, 2019 by Spencer Barnes   2.0.0   To Do bug discussion
    • 1
    updated Jun 23, 2020
  • map_reads failure case
    BICF/Astrocyte/atacseq_analysis#1 · created Apr 12, 2018 by Spencer Barnes   Version 2.1.0   bug
    • 0
    updated Jun 23, 2020
  • Add in peak call with SPP and IDR
    BICF/Astrocyte/chipseq_analysis#14 · created Nov 14, 2017 by Venkat Malladi   2.0.0   To Do enhancement
    • 0
    updated Jun 23, 2020
  • Add in blacklist
    BICF/Astrocyte/chipseq_analysis#9 · created Oct 11, 2017 by Venkat Malladi   2.0.0   To Do enhancement
    • 0
    updated Jun 23, 2020
  • Add 5GEXPE/SE as library options
    BICF/Astrocyte/cellranger_count#56 · created Nov 20, 2020 by Gervaise Henry   3.0.0   Doing critical
    • CLOSED
    • 2
    • 0
    updated Nov 20, 2020
  • Add ability to handle dual index
    BICF/Astrocyte/cellranger_mkfastq#44 · created Oct 30, 2020 by Gervaise Henry   Pending   To Do critical enhancement
    • 4
    updated Nov 03, 2020
  • Thread error on BioHPC
    BICF/Astrocyte/cellranger_count#44 · created Apr 20, 2020 by Gervaise Henry   v2.1.1   Doing To Do bug confirmed critical
    • CLOSED
    • 1
    • 0
    updated Apr 20, 2020
  • Ignore dual index
    BICF/Astrocyte/cellranger_mkfastq#38 · created Mar 19, 2020 by Gervaise Henry   v2.1.5   Doing critical enhancement
    • CLOSED
    • 1
    • 1
    updated Jun 20, 2020
  • Add ulimit to cellranger process
    BICF/Astrocyte/cellranger_mkfastq#37 · created Feb 21, 2020 by Gervaise Henry   v2.1.5   Doing bug confirmed critical
    • CLOSED
    • 1
    • 1
    updated Jun 20, 2020
  • BUG: thread error on Astrocyte
    BICF/Astrocyte/cellranger_count#40 · created Feb 21, 2020 by Gervaise Henry   v2.1.1   bug confirmed critical
    • CLOSED
    • 1
    • 0
    updated Apr 20, 2020
  • Add 3':5' param
    BICF/Astrocyte/cellranger_count#38 · created Dec 05, 2019 by Gervaise Henry   v2.1.1   Doing critical enhancement
    • CLOSED
    • 1
    • 0
    updated Apr 14, 2020
  • Fix astrocyte regex
    BICF/Astrocyte/cellranger_mkfastq#15 · created Apr 25, 2019 by Gervaise Henry   v1.1.0   bug critical
    • CLOSED
    • 2
    • 0
    updated Apr 26, 2019
  • Change nextflow fastq rename to iterate sample not lane
    BICF/Astrocyte/cellranger_count#19 · created Mar 27, 2019 by Gervaise Henry   v1.1.0   bug critical
    • CLOSED
    • 1
    • 0
    updated Apr 26, 2019
  • 5GEX QC data not present in multiqc report
    BICF/Astrocyte/cellranger_count#54 · created Nov 04, 2020 by Gervaise Henry   3.0.0   To Do bug confirmed
    • 0
    updated Nov 04, 2020
  • Ref 2020-A not compatible with cellrangers < 4.0.0
    BICF/Astrocyte/cellranger_count#53 · created Oct 16, 2020 by Gervaise Henry   3.0.0   To Do bug
    • 1
    updated Nov 20, 2020
  • Add test for astrocyte specific run of pipline   3 of 3 tasks completed
    BICF/Astrocyte/cellranger_mkfastq#41 · created Jun 26, 2020 by Venkat Malladi   To Do bug
    • 1
    • 0
    updated Oct 30, 2020
  • Add test for astrocyte 0.3.1   0 of 3 tasks completed
    BICF/Astrocyte/cellranger_count#49 · created Jun 26, 2020 by Venkat Malladi   Wait bug
    • 0
    updated Aug 02, 2020
  • Multiqc failure
    BICF/Astrocyte/cellranger_count#45 · created Apr 26, 2020 by Gervaise Henry   To Do bug
    • CLOSED
    • 1
    • 0
    updated Apr 26, 2020
  • add checks to checkDesign process
    BICF/Astrocyte/cellranger_mkfastq#34 · created Sep 11, 2019 by Spencer Barnes   v2.1.5   bug enhancement
    • CLOSED
    • 1
    • 2
    updated Nov 07, 2019
  • Check for space in design file error
    BICF/Astrocyte/cellranger_count#37 · created Sep 03, 2019 by Gervaise Henry   v2.1.1   bug
    • CLOSED
    • 1
    • 1
    updated Nov 07, 2019
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