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Priority
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Title
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Blocking
diffbind design file error
BICF/Astrocyte/chipseq_analysis#44
· created
May 09, 2019
by
Spencer Barnes
2.0.0
To Do
bug
discussion
1
updated
Jun 23, 2020
map_reads failure case
BICF/Astrocyte/atacseq_analysis#1
· created
Apr 12, 2018
by
Spencer Barnes
Version 2.1.0
bug
0
updated
Jun 23, 2020
Add in peak call with SPP and IDR
BICF/Astrocyte/chipseq_analysis#14
· created
Nov 14, 2017
by
Venkat Malladi
2.0.0
To Do
enhancement
0
updated
Jun 23, 2020
Add in blacklist
BICF/Astrocyte/chipseq_analysis#9
· created
Oct 11, 2017
by
Venkat Malladi
2.0.0
To Do
enhancement
0
updated
Jun 23, 2020
Add 5GEXPE/SE as library options
BICF/Astrocyte/cellranger_count#56
· created
Nov 20, 2020
by
Gervaise Henry
3.0.0
Doing
critical
CLOSED
2
0
updated
Nov 20, 2020
Add ability to handle dual index
BICF/Astrocyte/cellranger_mkfastq#44
· created
Oct 30, 2020
by
Gervaise Henry
Pending
To Do
critical
enhancement
4
updated
Nov 03, 2020
Thread error on BioHPC
BICF/Astrocyte/cellranger_count#44
· created
Apr 20, 2020
by
Gervaise Henry
v2.1.1
Doing
To Do
bug
confirmed
critical
CLOSED
1
0
updated
Apr 20, 2020
Ignore dual index
BICF/Astrocyte/cellranger_mkfastq#38
· created
Mar 19, 2020
by
Gervaise Henry
v2.1.5
Doing
critical
enhancement
CLOSED
1
1
updated
Jun 20, 2020
Add ulimit to cellranger process
BICF/Astrocyte/cellranger_mkfastq#37
· created
Feb 21, 2020
by
Gervaise Henry
v2.1.5
Doing
bug
confirmed
critical
CLOSED
1
1
updated
Jun 20, 2020
BUG: thread error on Astrocyte
BICF/Astrocyte/cellranger_count#40
· created
Feb 21, 2020
by
Gervaise Henry
v2.1.1
bug
confirmed
critical
CLOSED
1
0
updated
Apr 20, 2020
Add 3':5' param
BICF/Astrocyte/cellranger_count#38
· created
Dec 05, 2019
by
Gervaise Henry
v2.1.1
Doing
critical
enhancement
CLOSED
1
0
updated
Apr 14, 2020
Fix astrocyte regex
BICF/Astrocyte/cellranger_mkfastq#15
· created
Apr 25, 2019
by
Gervaise Henry
v1.1.0
bug
critical
CLOSED
2
0
updated
Apr 26, 2019
Change nextflow fastq rename to iterate sample not lane
BICF/Astrocyte/cellranger_count#19
· created
Mar 27, 2019
by
Gervaise Henry
v1.1.0
bug
critical
CLOSED
1
0
updated
Apr 26, 2019
5GEX QC data not present in multiqc report
BICF/Astrocyte/cellranger_count#54
· created
Nov 04, 2020
by
Gervaise Henry
3.0.0
To Do
bug
confirmed
0
updated
Nov 04, 2020
Ref 2020-A not compatible with cellrangers < 4.0.0
BICF/Astrocyte/cellranger_count#53
· created
Oct 16, 2020
by
Gervaise Henry
3.0.0
To Do
bug
1
updated
Nov 20, 2020
Add test for astrocyte specific run of pipline
3 of 3 tasks completed
BICF/Astrocyte/cellranger_mkfastq#41
· created
Jun 26, 2020
by
Venkat Malladi
To Do
bug
1
0
updated
Oct 30, 2020
Add test for astrocyte 0.3.1
0 of 3 tasks completed
BICF/Astrocyte/cellranger_count#49
· created
Jun 26, 2020
by
Venkat Malladi
Wait
bug
0
updated
Aug 02, 2020
Multiqc failure
BICF/Astrocyte/cellranger_count#45
· created
Apr 26, 2020
by
Gervaise Henry
To Do
bug
CLOSED
1
0
updated
Apr 26, 2020
add checks to checkDesign process
BICF/Astrocyte/cellranger_mkfastq#34
· created
Sep 11, 2019
by
Spencer Barnes
v2.1.5
bug
enhancement
CLOSED
1
2
updated
Nov 07, 2019
Check for space in design file error
BICF/Astrocyte/cellranger_count#37
· created
Sep 03, 2019
by
Gervaise Henry
v2.1.1
bug
CLOSED
1
1
updated
Nov 07, 2019
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