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BICF
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BICF
Issues

Open 76
Closed 273
All 349

Priority Created date Last updated Milestone due date Due date Popularity Label priority Manual Weight Blocking

diffbind design file error

BICF/Astrocyte/chipseq_analysis#44 · created May 09, 2019 by Spencer Barnes 2.0.0 To Do bug discussion
- 1
updated Jun 23, 2020
map_reads failure case

BICF/Astrocyte/atacseq_analysis#1 · created Apr 12, 2018 by Spencer Barnes Version 2.1.0 bug
- 0
updated Jun 23, 2020
Add in peak call with SPP and IDR

BICF/Astrocyte/chipseq_analysis#14 · created Nov 14, 2017 by Venkat Malladi 2.0.0 To Do enhancement
- 0
updated Jun 23, 2020
Add in blacklist

BICF/Astrocyte/chipseq_analysis#9 · created Oct 11, 2017 by Venkat Malladi 2.0.0 To Do enhancement
- 0
updated Jun 23, 2020
Add 5GEXPE/SE as library options

BICF/Astrocyte/cellranger_count#56 · created Nov 20, 2020 by Gervaise Henry 3.0.0 Doing critical
- CLOSED
- 2
- 0
updated Nov 20, 2020
Add ability to handle dual index

BICF/Astrocyte/cellranger_mkfastq#44 · created Oct 30, 2020 by Gervaise Henry Pending To Do critical enhancement
- 4
updated Nov 03, 2020
Thread error on BioHPC

BICF/Astrocyte/cellranger_count#44 · created Apr 20, 2020 by Gervaise Henry v2.1.1 Doing To Do bug confirmed critical
- CLOSED
- 1
- 0
updated Apr 20, 2020
Ignore dual index

BICF/Astrocyte/cellranger_mkfastq#38 · created Mar 19, 2020 by Gervaise Henry v2.1.5 Doing critical enhancement
- CLOSED
- 1
- 1
updated Jun 20, 2020
Add ulimit to cellranger process

BICF/Astrocyte/cellranger_mkfastq#37 · created Feb 21, 2020 by Gervaise Henry v2.1.5 Doing bug confirmed critical
- CLOSED
- 1
- 1
updated Jun 20, 2020
BUG: thread error on Astrocyte

BICF/Astrocyte/cellranger_count#40 · created Feb 21, 2020 by Gervaise Henry v2.1.1 bug confirmed critical
- CLOSED
- 1
- 0
updated Apr 20, 2020
Add 3':5' param

BICF/Astrocyte/cellranger_count#38 · created Dec 05, 2019 by Gervaise Henry v2.1.1 Doing critical enhancement
- CLOSED
- 1
- 0
updated Apr 14, 2020
Fix astrocyte regex

BICF/Astrocyte/cellranger_mkfastq#15 · created Apr 25, 2019 by Gervaise Henry v1.1.0 bug critical
- CLOSED
- 2
- 0
updated Apr 26, 2019
Change nextflow fastq rename to iterate sample not lane

BICF/Astrocyte/cellranger_count#19 · created Mar 27, 2019 by Gervaise Henry v1.1.0 bug critical
- CLOSED
- 1
- 0
updated Apr 26, 2019
5GEX QC data not present in multiqc report

BICF/Astrocyte/cellranger_count#54 · created Nov 04, 2020 by Gervaise Henry 3.0.0 To Do bug confirmed
- 0
updated Nov 04, 2020
Ref 2020-A not compatible with cellrangers < 4.0.0

BICF/Astrocyte/cellranger_count#53 · created Oct 16, 2020 by Gervaise Henry 3.0.0 To Do bug
- 1
updated Nov 20, 2020
Add test for astrocyte specific run of pipline 3 of 3 tasks completed

BICF/Astrocyte/cellranger_mkfastq#41 · created Jun 26, 2020 by Venkat Malladi To Do bug
- 1
- 0
updated Oct 30, 2020
Add test for astrocyte 0.3.1 0 of 3 tasks completed

BICF/Astrocyte/cellranger_count#49 · created Jun 26, 2020 by Venkat Malladi Wait bug
- 0
updated Aug 02, 2020
Multiqc failure

BICF/Astrocyte/cellranger_count#45 · created Apr 26, 2020 by Gervaise Henry To Do bug
- CLOSED
- 1
- 0
updated Apr 26, 2020
add checks to checkDesign process

BICF/Astrocyte/cellranger_mkfastq#34 · created Sep 11, 2019 by Spencer Barnes v2.1.5 bug enhancement
- CLOSED
- 1
- 2
updated Nov 07, 2019
Check for space in design file error

BICF/Astrocyte/cellranger_count#37 · created Sep 03, 2019 by Gervaise Henry v2.1.1 bug
- CLOSED
- 1
- 1
updated Nov 07, 2019

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