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BICF
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BICF
Issues

Open 76
Closed 273
All 349

Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking

non-biological reads needs renaming

BICF/Astrocyte/sra_pipeline#30 · created Jul 19, 2021 by Venkat Malladi Bug fixes error correction
- 0
updated Jul 19, 2021
Paired-end

BICF/Astrocyte/sra_pipeline#29 · created Jul 19, 2021 by Venkat Malladi Bug fixes
- 0
updated Jul 19, 2021
Generate QC Plot

BICF/Astrocyte/cellranger_count#52 · created Sep 18, 2020 by Jeremy Mathews
- 0
updated Sep 18, 2020
Update to Astocyte 0.4.0 4 of 4 tasks completed

BICF/Astrocyte/cellranger_mkfastq#42 · created Sep 07, 2020 by Venkat Malladi To Do
- 1
- 0
updated Sep 07, 2020
Add flag for SAM instead of FastQ

BICF/Astrocyte/sra_pipeline#27 · created Aug 26, 2020 by Jonathan Gesell New Feature To Do Updates
- 0
updated Aug 26, 2020
Fix issue downloading and spliting for single cell data

BICF/Astrocyte/sra_pipeline#26 · created Aug 17, 2020 by Venkat Malladi Bug fixes
- 2
updated Aug 21, 2020
create down-sampled test data

BICF/Astrocyte/chipseq_analysis#88 · created Aug 07, 2020 by Spencer Barnes
- 0
updated Aug 07, 2020
Pipeline maintaince documentation

onboarding#20 · created Jun 30, 2020 by Venkat Malladi
- 0
updated Apr 06, 2021
Add test for astrocyte specific run of pipline 3 of 3 tasks completed

BICF/Astrocyte/cellranger_mkfastq#41 · created Jun 26, 2020 by Venkat Malladi To Do bug
- 1
- 0
updated Oct 30, 2020
Add test for astrocyte 0.3.1 0 of 3 tasks completed

BICF/Astrocyte/cellranger_count#49 · created Jun 26, 2020 by Venkat Malladi Wait bug
- 0
updated Aug 02, 2020
update test for astrocyte 0.3.1

BICF/Astrocyte/sra_pipeline#25 · created Jun 26, 2020 by Venkat Malladi
- 0
updated Jun 26, 2020
Parallelize tests

BICF/Astrocyte/sra_pipeline#22 · created Jun 16, 2020 by Jonathan Gesell Doing Updates testing
- 0
updated Jun 16, 2020
Comparison Script

BICF/KCE/kce_etl#28 · created Apr 25, 2020 by Venkat Malladi
- 0
updated Apr 25, 2020
New Beaker code

BICF/KCE/kce_etl#27 · created Apr 25, 2020 by Venkat Malladi
- 0
updated Apr 25, 2020
nullDataError

BICF/Astrocyte/sra_pipeline#13 · created Feb 06, 2020 by Jonathan Gesell Bug fixes To Do
- 0
updated Apr 20, 2020
Add tests surgery

BICF/KCE/kce_etl#26 · created Jan 28, 2020 by Venkat Malladi
- 1
updated Feb 07, 2020
Add tests radiation

BICF/KCE/kce_etl#25 · created Dec 12, 2019 by Venkat Malladi
- 0
updated Dec 12, 2019
Add tests Medication

BICF/KCE/kce_etl#24 · created Dec 12, 2019 by Venkat Malladi
- 0
updated Dec 12, 2019
File vs Channel

BICF/Astrocyte/sra_pipeline#10 · created Dec 03, 2019 by Jeremy Mathews To Do
- 1
- 3
updated Aug 27, 2020
Shiny App 4 of 6 tasks completed

BICF/Astrocyte/cellranger_count#35 · created Jul 31, 2019 by Gervaise Henry Wait enhancement
- 1
updated Aug 02, 2020

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