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Title
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Blocking
diffbind design file error
BICF/Astrocyte/chipseq_analysis#44
· created
May 09, 2019
by
Spencer Barnes
2.0.0
To Do
bug
discussion
1
updated
Jun 23, 2020
map_reads failure case
BICF/Astrocyte/atacseq_analysis#1
· created
Apr 12, 2018
by
Spencer Barnes
Version 2.1.0
bug
0
updated
Jun 23, 2020
Add in peak call with SPP and IDR
BICF/Astrocyte/chipseq_analysis#14
· created
Nov 14, 2017
by
Venkat Malladi
2.0.0
To Do
enhancement
0
updated
Jun 23, 2020
Add in blacklist
BICF/Astrocyte/chipseq_analysis#9
· created
Oct 11, 2017
by
Venkat Malladi
2.0.0
To Do
enhancement
0
updated
Jun 23, 2020
Upgrade to cellranger 5.0.0
BICF/Astrocyte/cellranger_mkfastq#45
· created
Nov 20, 2020
by
Gervaise Henry
3.0.0
To Do
0
updated
Nov 20, 2020
Add 5GEXPE/SE as library options
BICF/Astrocyte/cellranger_count#56
· created
Nov 20, 2020
by
Gervaise Henry
3.0.0
Doing
critical
CLOSED
2
0
updated
Nov 20, 2020
Add cellranger 5.0.0
BICF/Astrocyte/cellranger_count#55
· created
Nov 20, 2020
by
Gervaise Henry
3.0.0
To Do
support
0
updated
Nov 20, 2020
5GEX QC data not present in multiqc report
BICF/Astrocyte/cellranger_count#54
· created
Nov 04, 2020
by
Gervaise Henry
3.0.0
To Do
bug
confirmed
0
updated
Nov 04, 2020
Add ability to handle dual index
BICF/Astrocyte/cellranger_mkfastq#44
· created
Oct 30, 2020
by
Gervaise Henry
Pending
To Do
critical
enhancement
4
updated
Nov 03, 2020
Add output comments for untarBCL
BICF/Astrocyte/cellranger_mkfastq#43
· created
Oct 29, 2020
by
Gervaise Henry
Pending
To Do
enhancement
1
updated
Nov 03, 2020
Ref 2020-A not compatible with cellrangers < 4.0.0
BICF/Astrocyte/cellranger_count#53
· created
Oct 16, 2020
by
Gervaise Henry
3.0.0
To Do
bug
1
updated
Nov 20, 2020
Version Zenodo
BICF/Astrocyte/cellranger_count#51
· created
Aug 14, 2020
by
Gervaise Henry
2.2.0
CLOSED
0
updated
Aug 15, 2020
Generate Raw RDS file
BICF/Astrocyte/cellranger_count#50
· created
Jul 31, 2020
by
Venkat Malladi
2.2.0
Doing
enhancement
CLOSED
1
2
updated
Aug 14, 2020
Update multiqc version/references report
BICF/Astrocyte/cellranger_count#48
· created
Jun 23, 2020
by
Gervaise Henry
3.0.0
To Do
documentation
enhancement
0
updated
Nov 03, 2020
Update multiqc version/references report
BICF/Astrocyte/cellranger_mkfastq#40
· created
Jun 23, 2020
by
Gervaise Henry
Pending
To Do
documentation
enhancement
0
updated
Nov 03, 2020
Add Jon to author list
1 of 2 tasks completed
BICF/Astrocyte/cellranger_count#47
· created
Jun 22, 2020
by
Gervaise Henry
2.2.0
CLOSED
1
updated
Aug 14, 2020
Add simple integration CI test
BICF/Astrocyte/cellranger_count#46
· created
Apr 26, 2020
by
Gervaise Henry
3.0.0
To Do
enhancement
0
updated
Nov 03, 2020
Thread error on BioHPC
BICF/Astrocyte/cellranger_count#44
· created
Apr 20, 2020
by
Gervaise Henry
v2.1.1
Doing
To Do
bug
confirmed
critical
CLOSED
1
0
updated
Apr 20, 2020
Remove unnecessary files from output
BICF/Astrocyte/cellranger_count#43
· created
Apr 13, 2020
by
Gervaise Henry
v2.1.1
Doing
enhancement
CLOSED
0
updated
Apr 14, 2020
Update params to current standards
BICF/Astrocyte/cellranger_count#42
· created
Apr 13, 2020
by
Gervaise Henry
v2.1.1
Doing
enhancement
CLOSED
1
0
updated
Apr 15, 2020
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