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  • BICF
  • Issues

  • Open 76
  • Closed 273
  • All 349
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking
  • Gender to sex
    BICF/KCE/kce_etl#29 · created Jul 01, 2020 by Venkat Malladi
    • CLOSED
    • 1
    updated Jul 01, 2020
  • Update to astrocyte 0.3.1
    BICF/Astrocyte/atacseq_analysis#42 · created Jun 26, 2020 by Venkat Malladi   Version 2.1.0
    • CLOSED
    • 0
    updated Jul 01, 2020
  • Update to astrocyte 0.3.1
    BICF/Astrocyte/chipseq_analysis#86 · created Jun 26, 2020 by Venkat Malladi   2.0.0
    • CLOSED
    • 0
    updated Jul 01, 2020
  • Track chip-seq usage
    BICF/Astrocyte/chipseq_analysis#84 · created Jun 19, 2020 by Venkat Malladi
    • CLOSED
    • 1
    • 1
    updated Jul 01, 2020
  • Astrocyte fixes
    BICF/Astrocyte/atacseq_analysis#40 · created Jun 19, 2020 by Venkat Malladi
    • CLOSED
    • 1
    • 0
    updated Jun 21, 2020
  • Add base mask
    BICF/Astrocyte/cellranger_mkfastq#39 · created Mar 20, 2020 by Gervaise Henry   v2.1.5   Doing enhancement
    • CLOSED
    • 1
    • 2
    updated Jun 20, 2020
  • Ignore dual index
    BICF/Astrocyte/cellranger_mkfastq#38 · created Mar 19, 2020 by Gervaise Henry   v2.1.5   Doing critical enhancement
    • CLOSED
    • 1
    • 1
    updated Jun 20, 2020
  • Add ulimit to cellranger process
    BICF/Astrocyte/cellranger_mkfastq#37 · created Feb 21, 2020 by Gervaise Henry   v2.1.5   Doing bug confirmed critical
    • CLOSED
    • 1
    • 1
    updated Jun 20, 2020
  • Tests for astrocyte
    BICF/Astrocyte/atacseq_analysis#39 · created Jun 11, 2020 by Venkat Malladi
    • CLOSED
    • 1
    • 0
    updated Jun 18, 2020
  • Add badges
    BICF/Astrocyte/sra_pipeline#21 · created Jun 02, 2020 by Venkat Malladi
    • CLOSED
    • 1
    • 0
    updated Jun 17, 2020
  • updateUnitTests
    BICF/Astrocyte/sra_pipeline#14 · created Feb 06, 2020 by Jonathan Gesell   Singularity 2.0.0 Compatability   To Do Updates
    • CLOSED
    • 1
    • 1
    updated Jun 17, 2020
  • Annotate peaks
    BICF/Astrocyte/atacseq_analysis#32 · created Jan 09, 2020 by Holly Ruess   Version 2.0   enhancment
    • CLOSED
    • 1
    • 0
    updated Jun 11, 2020
  • Blacklist of regions
    BICF/Astrocyte/atacseq_analysis#31 · created Jan 09, 2020 by Holly Ruess   Version 2.0   enhancment
    • CLOSED
    • 1
    • 0
    updated Jun 09, 2020
  • Add fragment size distribution
    BICF/Astrocyte/atacseq_analysis#27 · created Jan 09, 2020 by Holly Ruess   Version 2.0   enhancment
    • CLOSED
    • 2
    • 1
    updated Jun 09, 2020
  • Update Astrocyte configuration   4 of 8 tasks completed
    BICF/Astrocyte/sra_pipeline#18 · created Apr 04, 2020 by Venkat Malladi
    • CLOSED
    • 1
    • 0
    updated Jun 01, 2020
  • BUG: Cannot handle multiple runs
    BICF/Astrocyte/sra_pipeline#16 · created Apr 03, 2020 by Gervaise Henry   To Do
    • CLOSED
    • 1
    • 2
    updated Jun 01, 2020
  • Convert SOLID sequencing to basecall
    BICF/Astrocyte/sra_pipeline#15 · created Mar 26, 2020 by Venkat Malladi   Bug fixes To Do error correction
    • CLOSED
    • 1
    • 0
    updated Jun 01, 2020
  • TSS enrichment score
    BICF/Astrocyte/atacseq_analysis#30 · created Jan 09, 2020 by Holly Ruess   Version 2.0   enhancment
    • CLOSED
    • 2
    • 0
    updated May 28, 2020
  • Fix concurrent runners
    BICF/Astrocyte/atacseq_analysis#21 · created Dec 20, 2019 by Venkat Malladi
    • CLOSED
    • 4
    updated May 28, 2020
  • Add in references and version used in script
    BICF/Astrocyte/atacseq_analysis#9 · created May 02, 2019 by Venkat Malladi   Version 2.0   critical
    • CLOSED
    • 1
    updated May 28, 2020
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