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BICF
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BICF
Issues

Open 76
Closed 273
All 349

Priority Created date Last updated Milestone due date Due date Popularity Label priority Manual Weight Blocking

Annotate Diffbind output

BICF/Astrocyte/chipseq_analysis#63 · created Aug 25, 2019 by Holly Ruess 2.0.0 To Do enhancement
- 0
updated Dec 29, 2020
Strip spaces in design file

BICF/Astrocyte/chipseq_analysis#90 · created Oct 20, 2020 by Venkat Malladi 2.0.0 bug
- 0
updated Dec 29, 2020
Diffbind is tsv not csv

BICF/Astrocyte/chipseq_analysis#89 · created Sep 07, 2020 by Venkat Malladi 2.0.0 bug
- 0
updated Dec 29, 2020
Fix README

BICF/Astrocyte/sra_pipeline#28 · created Nov 24, 2020 by Jeremy Mathews
- CLOSED
- 1
- 0
updated Nov 25, 2020
Add 5GEXPE/SE as library options

BICF/Astrocyte/cellranger_count#56 · created Nov 20, 2020 by Gervaise Henry 3.0.0 Doing critical
- CLOSED
- 2
- 0
updated Nov 20, 2020
Add cellranger 5.0.0

BICF/Astrocyte/cellranger_count#55 · created Nov 20, 2020 by Gervaise Henry 3.0.0 To Do support
- 0
updated Nov 20, 2020
Upgrade to cellranger 5.0.0

BICF/Astrocyte/cellranger_mkfastq#45 · created Nov 20, 2020 by Gervaise Henry 3.0.0 To Do
- 0
updated Nov 20, 2020
Ref 2020-A not compatible with cellrangers < 4.0.0

BICF/Astrocyte/cellranger_count#53 · created Oct 16, 2020 by Gervaise Henry 3.0.0 To Do bug
- 1
updated Nov 20, 2020
5GEX QC data not present in multiqc report

BICF/Astrocyte/cellranger_count#54 · created Nov 04, 2020 by Gervaise Henry 3.0.0 To Do bug confirmed
- 0
updated Nov 04, 2020
Update multiqc version/references report

BICF/Astrocyte/cellranger_count#48 · created Jun 23, 2020 by Gervaise Henry 3.0.0 To Do documentation enhancement
- 0
updated Nov 03, 2020
Add simple integration CI test

BICF/Astrocyte/cellranger_count#46 · created Apr 26, 2020 by Gervaise Henry 3.0.0 To Do enhancement
- 0
updated Nov 03, 2020
Add ability to handle dual index

BICF/Astrocyte/cellranger_mkfastq#44 · created Oct 30, 2020 by Gervaise Henry Pending To Do critical enhancement
- 4
updated Nov 03, 2020
Add output comments for untarBCL

BICF/Astrocyte/cellranger_mkfastq#43 · created Oct 29, 2020 by Gervaise Henry Pending To Do enhancement
- 1
updated Nov 03, 2020
Update multiqc version/references report

BICF/Astrocyte/cellranger_mkfastq#40 · created Jun 23, 2020 by Gervaise Henry Pending To Do documentation enhancement
- 0
updated Nov 03, 2020
Add test for astrocyte specific run of pipline 3 of 3 tasks completed

BICF/Astrocyte/cellranger_mkfastq#41 · created Jun 26, 2020 by Venkat Malladi To Do bug
- 1
- 0
updated Oct 30, 2020
Update cancer gene

BICF/KCE/kce_etl#30 · created Oct 19, 2020 by Venkat Malladi
- CLOSED
- 1
- 0
updated Oct 19, 2020
Generate QC Plot

BICF/Astrocyte/cellranger_count#52 · created Sep 18, 2020 by Jeremy Mathews
- 0
updated Sep 18, 2020
Update to Astocyte 0.4.0 4 of 4 tasks completed

BICF/Astrocyte/cellranger_mkfastq#42 · created Sep 07, 2020 by Venkat Malladi To Do
- 1
- 0
updated Sep 07, 2020
Update orcid Jason and Holly

onboarding#22 · created Aug 31, 2020 by Venkat Malladi
- CLOSED
- 1
- 0
updated Aug 31, 2020
File vs Channel

BICF/Astrocyte/sra_pipeline#10 · created Dec 03, 2019 by Jeremy Mathews To Do
- 1
- 3
updated Aug 27, 2020

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