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BICF
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BICF
Issues

Open 76
Closed 273
All 349

Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking

diffbind design file error

BICF/Astrocyte/chipseq_analysis#44 · created May 09, 2019 by Spencer Barnes 2.0.0 To Do bug discussion
- 1
updated Jun 23, 2020
map_reads failure case

BICF/Astrocyte/atacseq_analysis#1 · created Apr 12, 2018 by Spencer Barnes Version 2.1.0 bug
- 0
updated Jun 23, 2020
Add in peak call with SPP and IDR

BICF/Astrocyte/chipseq_analysis#14 · created Nov 14, 2017 by Venkat Malladi 2.0.0 To Do enhancement
- 0
updated Jun 23, 2020
Add in blacklist

BICF/Astrocyte/chipseq_analysis#9 · created Oct 11, 2017 by Venkat Malladi 2.0.0 To Do enhancement
- 0
updated Jun 23, 2020
Add ability to handle dual index

BICF/Astrocyte/cellranger_mkfastq#44 · created Oct 30, 2020 by Gervaise Henry Pending To Do critical enhancement
- 4
updated Nov 03, 2020
5GEX QC data not present in multiqc report

BICF/Astrocyte/cellranger_count#54 · created Nov 04, 2020 by Gervaise Henry 3.0.0 To Do bug confirmed
- 0
updated Nov 04, 2020
Ref 2020-A not compatible with cellrangers < 4.0.0

BICF/Astrocyte/cellranger_count#53 · created Oct 16, 2020 by Gervaise Henry 3.0.0 To Do bug
- 1
updated Nov 20, 2020
Add test for astrocyte specific run of pipline 3 of 3 tasks completed

BICF/Astrocyte/cellranger_mkfastq#41 · created Jun 26, 2020 by Venkat Malladi To Do bug
- 1
- 0
updated Oct 30, 2020
Add test for astrocyte 0.3.1 0 of 3 tasks completed

BICF/Astrocyte/cellranger_count#49 · created Jun 26, 2020 by Venkat Malladi Wait bug
- 0
updated Aug 02, 2020
Add cellranger 5.0.0

BICF/Astrocyte/cellranger_count#55 · created Nov 20, 2020 by Gervaise Henry 3.0.0 To Do support
- 0
updated Nov 20, 2020
Insert vizapp code

BICF/Astrocyte/chipseq_analysis#92 · created Aug 04, 2021 by Erand Smakaj bug
- 1
updated Aug 05, 2021
Setting singularity to PWD doesnt work in the /work directory.

BICF/Astrocyte/rnaseq#20 · created Jul 22, 2021 by Jeremy Mathews
- 0
updated Jul 22, 2021
non-biological reads needs renaming

BICF/Astrocyte/sra_pipeline#30 · created Jul 19, 2021 by Venkat Malladi Bug fixes error correction
- 0
updated Jul 19, 2021
Paired-end

BICF/Astrocyte/sra_pipeline#29 · created Jul 19, 2021 by Venkat Malladi Bug fixes
- 0
updated Jul 19, 2021
Upgrade to cellranger 5.0.0

BICF/Astrocyte/cellranger_mkfastq#45 · created Nov 20, 2020 by Gervaise Henry 3.0.0 To Do
- 0
updated Nov 20, 2020
Add output comments for untarBCL

BICF/Astrocyte/cellranger_mkfastq#43 · created Oct 29, 2020 by Gervaise Henry Pending To Do enhancement
- 1
updated Nov 03, 2020
Generate QC Plot

BICF/Astrocyte/cellranger_count#52 · created Sep 18, 2020 by Jeremy Mathews
- 0
updated Sep 18, 2020
Update to Astocyte 0.4.0 4 of 4 tasks completed

BICF/Astrocyte/cellranger_mkfastq#42 · created Sep 07, 2020 by Venkat Malladi To Do
- 1
- 0
updated Sep 07, 2020
Add flag for SAM instead of FastQ

BICF/Astrocyte/sra_pipeline#27 · created Aug 26, 2020 by Jonathan Gesell New Feature To Do Updates
- 0
updated Aug 26, 2020
Fix issue downloading and spliting for single cell data

BICF/Astrocyte/sra_pipeline#26 · created Aug 17, 2020 by Venkat Malladi Bug fixes
- 2
updated Aug 21, 2020

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