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  • BICF
  • Issues

  • Open 76
  • Closed 273
  • All 349
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking
  • diffbind design file error
    BICF/Astrocyte/chipseq_analysis#44 · created May 09, 2019 by Spencer Barnes   2.0.0   To Do bug discussion
    • 1
    updated Jun 23, 2020
  • map_reads failure case
    BICF/Astrocyte/atacseq_analysis#1 · created Apr 12, 2018 by Spencer Barnes   Version 2.1.0   bug
    • 0
    updated Jun 23, 2020
  • Add in peak call with SPP and IDR
    BICF/Astrocyte/chipseq_analysis#14 · created Nov 14, 2017 by Venkat Malladi   2.0.0   To Do enhancement
    • 0
    updated Jun 23, 2020
  • Add in blacklist
    BICF/Astrocyte/chipseq_analysis#9 · created Oct 11, 2017 by Venkat Malladi   2.0.0   To Do enhancement
    • 0
    updated Jun 23, 2020
  • Upgrade to cellranger 5.0.0
    BICF/Astrocyte/cellranger_mkfastq#45 · created Nov 20, 2020 by Gervaise Henry   3.0.0   To Do
    • 0
    updated Nov 20, 2020
  • Add cellranger 5.0.0
    BICF/Astrocyte/cellranger_count#55 · created Nov 20, 2020 by Gervaise Henry   3.0.0   To Do support
    • 0
    updated Nov 20, 2020
  • 5GEX QC data not present in multiqc report
    BICF/Astrocyte/cellranger_count#54 · created Nov 04, 2020 by Gervaise Henry   3.0.0   To Do bug confirmed
    • 0
    updated Nov 04, 2020
  • Add ability to handle dual index
    BICF/Astrocyte/cellranger_mkfastq#44 · created Oct 30, 2020 by Gervaise Henry   Pending   To Do critical enhancement
    • 4
    updated Nov 03, 2020
  • Add output comments for untarBCL
    BICF/Astrocyte/cellranger_mkfastq#43 · created Oct 29, 2020 by Gervaise Henry   Pending   To Do enhancement
    • 1
    updated Nov 03, 2020
  • Ref 2020-A not compatible with cellrangers < 4.0.0
    BICF/Astrocyte/cellranger_count#53 · created Oct 16, 2020 by Gervaise Henry   3.0.0   To Do bug
    • 1
    updated Nov 20, 2020
  • Update multiqc version/references report
    BICF/Astrocyte/cellranger_count#48 · created Jun 23, 2020 by Gervaise Henry   3.0.0   To Do documentation enhancement
    • 0
    updated Nov 03, 2020
  • Update multiqc version/references report
    BICF/Astrocyte/cellranger_mkfastq#40 · created Jun 23, 2020 by Gervaise Henry   Pending   To Do documentation enhancement
    • 0
    updated Nov 03, 2020
  • Add simple integration CI test
    BICF/Astrocyte/cellranger_count#46 · created Apr 26, 2020 by Gervaise Henry   3.0.0   To Do enhancement
    • 0
    updated Nov 03, 2020
  • Containerization
    BICF/Astrocyte/chipseq_analysis#64 · created Sep 12, 2019 by Jonathan Gesell   3.0.0   To Do
    • 0
    updated Jun 23, 2020
  • Make both astrocyte compatable and other cluster compatable
    BICF/Astrocyte/chipseq_analysis#60 · created Jul 10, 2019 by Holly Ruess   3.0.0   To Do enhancement
    • 0
    updated Jun 23, 2020
  • Optimizations
    BICF/Astrocyte/chipseq_analysis#39 · created Apr 23, 2019 by Jonathan Gesell   3.0.0   discussion enhancement
    • 0
    updated Jun 23, 2020
  • Memory
    BICF/Astrocyte/chipseq_analysis#32 · created Mar 12, 2019 by Venkat Malladi   3.0.0   discussion
    • 0
    updated Jun 23, 2020
  • Add ability to count additional features
    BICF/Astrocyte/cellranger_count#10 · created Mar 04, 2019 by Gervaise Henry   Pending   To Do enhancement
    • 0
    updated Jun 21, 2020
  • Insert vizapp code
    BICF/Astrocyte/chipseq_analysis#92 · created Aug 04, 2021 by Erand Smakaj   bug
    • 1
    updated Aug 05, 2021
  • Setting singularity to PWD doesnt work in the /work directory.
    BICF/Astrocyte/rnaseq#20 · created Jul 22, 2021 by Jeremy Mathews
    • 0
    updated Jul 22, 2021
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