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  • BICF
  • Issues

  • Open 76
  • Closed 273
  • All 349
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking
  • Handle multi-flowcells in fastqc and multiqc
    BICF/Astrocyte/cellranger_mkfastq#13 · created Apr 17, 2019 by Gervaise Henry   v1.1.0   bug
    • CLOSED
    • 1
    • 0
    updated Apr 26, 2019
  • Add params from biohpc.config into main.nf
    BICF/Astrocyte/cellranger_count#13 · created Mar 07, 2019 by Gervaise Henry   Put on Astrocyte Production (1.0.0)   bug
    • CLOSED
    • 1
    • 2
    updated Mar 22, 2019
  • Fix design file overwrite
    BICF/Astrocyte/cellranger_count#6 · created Feb 07, 2019 by Gervaise Henry   Put on Astrocyte Production (1.0.0)   bug
    • CLOSED
    • 0
    updated Mar 05, 2019
  • Add cellranger 5.0.0
    BICF/Astrocyte/cellranger_count#55 · created Nov 20, 2020 by Gervaise Henry   3.0.0   To Do support
    • 0
    updated Nov 20, 2020
  • Insert vizapp code
    BICF/Astrocyte/chipseq_analysis#92 · created Aug 04, 2021 by Erand Smakaj   bug
    • 1
    updated Aug 05, 2021
  • Update nf-tower token
    BICF/Astrocyte/chipseq_analysis#91 · created Jul 25, 2021 by Venkat Malladi   2.0.0   critical
    • 1
    • 0
    updated Jul 25, 2021
  • Setting singularity to PWD doesnt work in the /work directory.
    BICF/Astrocyte/rnaseq#20 · created Jul 22, 2021 by Jeremy Mathews
    • 0
    updated Jul 22, 2021
  • non-biological reads needs renaming
    BICF/Astrocyte/sra_pipeline#30 · created Jul 19, 2021 by Venkat Malladi   Bug fixes error correction
    • 0
    updated Jul 19, 2021
  • Paired-end
    BICF/Astrocyte/sra_pipeline#29 · created Jul 19, 2021 by Venkat Malladi   Bug fixes
    • 0
    updated Jul 19, 2021
  • Vm's
    onboarding#23 · created Apr 06, 2021 by Venkat Malladi
    • CLOSED
    • 1
    • 0
    updated Apr 06, 2021
  • Fix README
    BICF/Astrocyte/sra_pipeline#28 · created Nov 24, 2020 by Jeremy Mathews
    • CLOSED
    • 1
    • 0
    updated Nov 25, 2020
  • Upgrade to cellranger 5.0.0
    BICF/Astrocyte/cellranger_mkfastq#45 · created Nov 20, 2020 by Gervaise Henry   3.0.0   To Do
    • 0
    updated Nov 20, 2020
  • Add output comments for untarBCL
    BICF/Astrocyte/cellranger_mkfastq#43 · created Oct 29, 2020 by Gervaise Henry   Pending   To Do enhancement
    • 1
    updated Nov 03, 2020
  • Strip spaces in design file
    BICF/Astrocyte/chipseq_analysis#90 · created Oct 20, 2020 by Venkat Malladi   2.0.0   bug
    • 0
    updated Dec 29, 2020
  • Update cancer gene
    BICF/KCE/kce_etl#30 · created Oct 19, 2020 by Venkat Malladi
    • CLOSED
    • 1
    • 0
    updated Oct 19, 2020
  • Generate QC Plot
    BICF/Astrocyte/cellranger_count#52 · created Sep 18, 2020 by Jeremy Mathews
    • 0
    updated Sep 18, 2020
  • Diffbind is tsv not csv
    BICF/Astrocyte/chipseq_analysis#89 · created Sep 07, 2020 by Venkat Malladi   2.0.0   bug
    • 0
    updated Dec 29, 2020
  • Update to Astocyte 0.4.0   4 of 4 tasks completed
    BICF/Astrocyte/cellranger_mkfastq#42 · created Sep 07, 2020 by Venkat Malladi   To Do
    • 1
    • 0
    updated Sep 07, 2020
  • Update orcid Jason and Holly
    onboarding#22 · created Aug 31, 2020 by Venkat Malladi
    • CLOSED
    • 1
    • 0
    updated Aug 31, 2020
  • Add flag for SAM instead of FastQ
    BICF/Astrocyte/sra_pipeline#27 · created Aug 26, 2020 by Jonathan Gesell   New Feature To Do Updates
    • 0
    updated Aug 26, 2020
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