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BICF
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BICF
Issues

Open 76
Closed 273
All 349

Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking

Diffbind is tsv not csv

BICF/Astrocyte/chipseq_analysis#89 · created Sep 07, 2020 by Venkat Malladi 2.0.0 bug
- 0
updated Dec 29, 2020
Update to Astocyte 0.4.0 4 of 4 tasks completed

BICF/Astrocyte/cellranger_mkfastq#42 · created Sep 07, 2020 by Venkat Malladi To Do
- 1
- 0
updated Sep 07, 2020
Update orcid Jason and Holly

onboarding#22 · created Aug 31, 2020 by Venkat Malladi
- CLOSED
- 1
- 0
updated Aug 31, 2020
Add flag for SAM instead of FastQ

BICF/Astrocyte/sra_pipeline#27 · created Aug 26, 2020 by Jonathan Gesell New Feature To Do Updates
- 0
updated Aug 26, 2020
Fix issue downloading and spliting for single cell data

BICF/Astrocyte/sra_pipeline#26 · created Aug 17, 2020 by Venkat Malladi Bug fixes
- 2
updated Aug 21, 2020
Version Zenodo

BICF/Astrocyte/cellranger_count#51 · created Aug 14, 2020 by Gervaise Henry 2.2.0
- CLOSED
- 0
updated Aug 15, 2020
create down-sampled test data

BICF/Astrocyte/chipseq_analysis#88 · created Aug 07, 2020 by Spencer Barnes
- 0
updated Aug 07, 2020
Generate Raw RDS file

BICF/Astrocyte/cellranger_count#50 · created Jul 31, 2020 by Venkat Malladi 2.2.0 Doing enhancement
- CLOSED
- 1
- 2
updated Aug 14, 2020
map reads fails to make bam files for long reads

BICF/Astrocyte/atacseq_analysis#43 · created Jul 28, 2020 by Venkat Malladi bug critical
- CLOSED
- 1
- 1
updated Jul 29, 2020
Add license.

BICF/Astrocyte/methylation_analysis#6 · created Jul 17, 2020 by Venkat Malladi 1.0.0
- CLOSED
- 1
- 0
updated Dec 29, 2020
Update outside collaboration fee structure

onboarding#21 · created Jul 14, 2020 by Venkat Malladi
- CLOSED
- 1
- 0
updated Jul 14, 2020
Add back tags per process

BICF/Astrocyte/methylation_analysis#5 · created Jul 11, 2020 by Venkat Malladi 1.0.0
- 0
updated Dec 29, 2020
Update DOI for Methylation pipeline

BICF/Astrocyte/methylation_analysis#4 · created Jul 11, 2020 by Venkat Malladi 1.0.0
- CLOSED
- 1
- 0
updated Dec 29, 2020
Add a changelog

BICF/Astrocyte/methylation_analysis#3 · created Jul 11, 2020 by Venkat Malladi 1.0.0
- 0
updated Dec 29, 2020
Update Readme

BICF/Astrocyte/methylation_analysis#2 · created Jul 11, 2020 by Venkat Malladi 1.0.0
- 0
updated Dec 29, 2020
Annotation file is missing data

BICF/Astrocyte/chipseq_analysis#87 · created Jul 06, 2020 by Venkat Malladi 2.0.0 bug
- CLOSED
- 1
- 0
updated Aug 07, 2020
Gender to sex

BICF/KCE/kce_etl#29 · created Jul 01, 2020 by Venkat Malladi
- CLOSED
- 1
updated Jul 01, 2020
Pipeline maintaince documentation

onboarding#20 · created Jun 30, 2020 by Venkat Malladi
- 0
updated Apr 06, 2021
Add test for astrocyte specific run of pipline 3 of 3 tasks completed

BICF/Astrocyte/cellranger_mkfastq#41 · created Jun 26, 2020 by Venkat Malladi To Do bug
- 1
- 0
updated Oct 30, 2020
Add test for astrocyte 0.3.1 0 of 3 tasks completed

BICF/Astrocyte/cellranger_count#49 · created Jun 26, 2020 by Venkat Malladi Wait bug
- 0
updated Aug 02, 2020

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