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BICF
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BICF
Issues

Open 76
Closed 273
All 349

Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking

Output software versions and methods and references

BICF/Astrocyte/chipseq_analysis#21 · created Dec 26, 2018 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 1
updated Apr 18, 2019
Split multiqc fastqc by r1/r2/i1

BICF/Astrocyte/cellranger_mkfastq#9 · created Apr 09, 2019 by Gervaise Henry Astrocyte Production (v1.0.0) enhancement
- CLOSED
- 1
- 0
updated Apr 12, 2019
Move software version report to the bottom

BICF/Astrocyte/cellranger_mkfastq#12 · created Apr 12, 2019 by Gervaise Henry Astrocyte Production (v1.0.0) enhancement suggestion
- CLOSED
- 1
- 0
updated Apr 12, 2019
Speed up fastqc and/or multiqc

BICF/Astrocyte/cellranger_mkfastq#11 · created Apr 10, 2019 by Gervaise Henry Astrocyte Production (v1.0.0) enhancement
- CLOSED
- 0
updated Apr 12, 2019
Add MultiQC

BICF/Astrocyte/cellranger_mkfastq#6 · created Apr 05, 2019 by Gervaise Henry Astrocyte Production (v1.0.0) enhancement
- CLOSED
- 0
updated Apr 10, 2019
Merge fastq lanes

BICF/Astrocyte/cellranger_mkfastq#5 · created Mar 28, 2019 by Gervaise Henry suggestion
- CLOSED
- 1
updated Apr 08, 2019
Fix process selector in config

BICF/Astrocyte/cellranger_mkfastq#4 · created Mar 27, 2019 by Gervaise Henry enhancement
- CLOSED
- 0
updated Apr 05, 2019
redirect_outputs

BICF/Astrocyte/cellranger_mkfastq#3 · created Mar 26, 2019 by Gervaise Henry enhancement
- CLOSED
- 0
updated Apr 05, 2019
Optimize mkfastq

BICF/Astrocyte/cellranger_mkfastq#2 · created Mar 24, 2019 by Gervaise Henry enhancement
- CLOSED
- 0
updated Apr 05, 2019
Last 3 steps don't go into user defined output directory

BICF/Astrocyte/chipseq_analysis#28 · created Jan 23, 2019 by Holly Ruess 1.0.0 bug
- CLOSED
- 0
updated Apr 03, 2019
Migrate cellranger_count basics

BICF/Astrocyte/cellranger_mkfastq#1 · created Mar 24, 2019 by Gervaise Henry enhancement
- CLOSED
- 0
updated Mar 28, 2019
Update Documentation

BICF/Astrocyte/cellranger_count#17 · created Mar 24, 2019 by Venkat Malladi Put on Astrocyte Production (1.0.0) documentation
- CLOSED
- 1
- 1
updated Mar 25, 2019
Add Astrocyte documentation

BICF/Astrocyte/cellranger_count#15 · created Mar 11, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) documentation
- CLOSED
- 1
- 0
updated Mar 24, 2019
Add params from biohpc.config into main.nf

BICF/Astrocyte/cellranger_count#13 · created Mar 07, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) bug
- CLOSED
- 1
- 2
updated Mar 22, 2019
New folders for all steps

BICF/Astrocyte/chipseq_analysis#33 · created Mar 12, 2019 by Venkat Malladi 1.0.0
- CLOSED
- 1
- 0
updated Mar 16, 2019
skip motif search and diff bind

BICF/Astrocyte/chipseq_analysis#31 · created Mar 08, 2019 by Holly Ruess 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Mar 12, 2019
Use SampleIds/ Experiment Id as file names throughtout pipeline

BICF/Astrocyte/chipseq_analysis#23 · created Dec 26, 2018 by Venkat Malladi 1.0.0 critical
- CLOSED
- 1
- 0
updated Mar 10, 2019
Make param.genomeLocation have full path

BICF/Astrocyte/cellranger_count#12 · created Mar 07, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 2
- 0
updated Mar 10, 2019
Add parameter for 10x kit version

BICF/Astrocyte/cellranger_count#11 · created Mar 04, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 1
- 0
updated Mar 05, 2019
Fix design file overwrite

BICF/Astrocyte/cellranger_count#6 · created Feb 07, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) bug
- CLOSED
- 0
updated Mar 05, 2019

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