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  • BICF
  • Issues

  • Open 76
  • Closed 273
  • All 349
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking
  • Output software versions and methods and references
    BICF/Astrocyte/chipseq_analysis#21 · created Dec 26, 2018 by Venkat Malladi   1.0.0   enhancement
    • CLOSED
    • 1
    • 1
    updated Apr 18, 2019
  • Split multiqc fastqc by r1/r2/i1
    BICF/Astrocyte/cellranger_mkfastq#9 · created Apr 09, 2019 by Gervaise Henry   Astrocyte Production (v1.0.0)   enhancement
    • CLOSED
    • 1
    • 0
    updated Apr 12, 2019
  • Move software version report to the bottom
    BICF/Astrocyte/cellranger_mkfastq#12 · created Apr 12, 2019 by Gervaise Henry   Astrocyte Production (v1.0.0)   enhancement suggestion
    • CLOSED
    • 1
    • 0
    updated Apr 12, 2019
  • Speed up fastqc and/or multiqc
    BICF/Astrocyte/cellranger_mkfastq#11 · created Apr 10, 2019 by Gervaise Henry   Astrocyte Production (v1.0.0)   enhancement
    • CLOSED
    • 0
    updated Apr 12, 2019
  • Add MultiQC
    BICF/Astrocyte/cellranger_mkfastq#6 · created Apr 05, 2019 by Gervaise Henry   Astrocyte Production (v1.0.0)   enhancement
    • CLOSED
    • 0
    updated Apr 10, 2019
  • Merge fastq lanes
    BICF/Astrocyte/cellranger_mkfastq#5 · created Mar 28, 2019 by Gervaise Henry   suggestion
    • CLOSED
    • 1
    updated Apr 08, 2019
  • Fix process selector in config
    BICF/Astrocyte/cellranger_mkfastq#4 · created Mar 27, 2019 by Gervaise Henry   enhancement
    • CLOSED
    • 0
    updated Apr 05, 2019
  • redirect_outputs
    BICF/Astrocyte/cellranger_mkfastq#3 · created Mar 26, 2019 by Gervaise Henry   enhancement
    • CLOSED
    • 0
    updated Apr 05, 2019
  • Optimize mkfastq
    BICF/Astrocyte/cellranger_mkfastq#2 · created Mar 24, 2019 by Gervaise Henry   enhancement
    • CLOSED
    • 0
    updated Apr 05, 2019
  • Last 3 steps don't go into user defined output directory
    BICF/Astrocyte/chipseq_analysis#28 · created Jan 23, 2019 by Holly Ruess   1.0.0   bug
    • CLOSED
    • 0
    updated Apr 03, 2019
  • Migrate cellranger_count basics
    BICF/Astrocyte/cellranger_mkfastq#1 · created Mar 24, 2019 by Gervaise Henry   enhancement
    • CLOSED
    • 0
    updated Mar 28, 2019
  • Update Documentation
    BICF/Astrocyte/cellranger_count#17 · created Mar 24, 2019 by Venkat Malladi   Put on Astrocyte Production (1.0.0)   documentation
    • CLOSED
    • 1
    • 1
    updated Mar 25, 2019
  • Add Astrocyte documentation
    BICF/Astrocyte/cellranger_count#15 · created Mar 11, 2019 by Gervaise Henry   Put on Astrocyte Production (1.0.0)   documentation
    • CLOSED
    • 1
    • 0
    updated Mar 24, 2019
  • Add params from biohpc.config into main.nf
    BICF/Astrocyte/cellranger_count#13 · created Mar 07, 2019 by Gervaise Henry   Put on Astrocyte Production (1.0.0)   bug
    • CLOSED
    • 1
    • 2
    updated Mar 22, 2019
  • New folders for all steps
    BICF/Astrocyte/chipseq_analysis#33 · created Mar 12, 2019 by Venkat Malladi   1.0.0
    • CLOSED
    • 1
    • 0
    updated Mar 16, 2019
  • skip motif search and diff bind
    BICF/Astrocyte/chipseq_analysis#31 · created Mar 08, 2019 by Holly Ruess   1.0.0   enhancement
    • CLOSED
    • 1
    • 0
    updated Mar 12, 2019
  • Use SampleIds/ Experiment Id as file names throughtout pipeline
    BICF/Astrocyte/chipseq_analysis#23 · created Dec 26, 2018 by Venkat Malladi   1.0.0   critical
    • CLOSED
    • 1
    • 0
    updated Mar 10, 2019
  • Make param.genomeLocation have full path
    BICF/Astrocyte/cellranger_count#12 · created Mar 07, 2019 by Gervaise Henry   Put on Astrocyte Production (1.0.0)   enhancement
    • CLOSED
    • 2
    • 0
    updated Mar 10, 2019
  • Add parameter for 10x kit version
    BICF/Astrocyte/cellranger_count#11 · created Mar 04, 2019 by Gervaise Henry   Put on Astrocyte Production (1.0.0)   enhancement
    • CLOSED
    • 1
    • 0
    updated Mar 05, 2019
  • Fix design file overwrite
    BICF/Astrocyte/cellranger_count#6 · created Feb 07, 2019 by Gervaise Henry   Put on Astrocyte Production (1.0.0)   bug
    • CLOSED
    • 0
    updated Mar 05, 2019
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