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BICF
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BICF
Issues

Open 76
Closed 273
All 349

Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking

Fix design file overwrite

BICF/Astrocyte/cellranger_count#6 · created Feb 07, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) bug
- CLOSED
- 0
updated Mar 05, 2019
Add MultiQC

BICF/Astrocyte/cellranger_count#5 · created Feb 06, 2019 by Gervaise Henry v1.1.0 enhancement
- CLOSED
- 3
- 1
updated Aug 15, 2019
Create output directory option

BICF/Astrocyte/cellranger_count#4 · created Feb 06, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 1
- 0
updated Apr 27, 2019
Make instructions

BICF/Astrocyte/cellranger_count#3 · created Feb 06, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) documentation
- CLOSED
- 1
- 0
updated Apr 27, 2019
Remove reference genome full folder

BICF/Astrocyte/cellranger_count#2 · created Feb 06, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 2
- 1
updated Apr 27, 2019
Add cellranger v3.0.1

BICF/Astrocyte/cellranger_count#1 · created Feb 06, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 2
- 0
updated Feb 07, 2019
add plotProfile

BICF/Astrocyte/chipseq_analysis#29 · created Jan 23, 2019 by Holly Ruess 1.1.0 enhancement
- CLOSED
- 1
- 0
updated Mar 15, 2020
Last 3 steps don't go into user defined output directory

BICF/Astrocyte/chipseq_analysis#28 · created Jan 23, 2019 by Holly Ruess 1.0.0 bug
- CLOSED
- 0
updated Apr 03, 2019
Add Pearson correlation, and make Spearman and Pearson Corr Plots pdf

BICF/Astrocyte/chipseq_analysis#27 · created Jan 16, 2019 by Holly Ruess 1.0.0
- CLOSED
- 1
updated Jan 31, 2019
callPeaksMACS exits when data is bad

BICF/Astrocyte/chipseq_analysis#26 · created Jan 15, 2019 by Holly Ruess 1.1.0 bug
- CLOSED
- 1
- 3
updated Mar 15, 2020
experimentQC plots are empty in PE

BICF/Astrocyte/chipseq_analysis#25 · created Jan 03, 2019 by Holly Ruess 1.0.0 bug
- CLOSED
- 0
updated Jan 06, 2019
Test Astrocyte

BICF/Astrocyte/chipseq_analysis#24 · created Dec 27, 2018 by Venkat Malladi 1.0.0 critical
- CLOSED
- 1
- 0
updated Apr 21, 2019
Use SampleIds/ Experiment Id as file names throughtout pipeline

BICF/Astrocyte/chipseq_analysis#23 · created Dec 26, 2018 by Venkat Malladi 1.0.0 critical
- CLOSED
- 1
- 0
updated Mar 10, 2019
Add defined output folder

BICF/Astrocyte/chipseq_analysis#22 · created Dec 26, 2018 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 0
updated Jan 06, 2019
Output software versions and methods and references

BICF/Astrocyte/chipseq_analysis#21 · created Dec 26, 2018 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 1
updated Apr 18, 2019
invalid option in map_qc.py

BICF/Astrocyte/chipseq_analysis#20 · created Dec 03, 2018 by Spencer Barnes bug
- CLOSED
- 1
updated Jan 05, 2019
workflow/process_scripts empty after cloning

BICF/Astrocyte/rnaseq#10 · created Nov 02, 2018 by Holly Ruess
- CLOSED
- 1
updated Nov 02, 2018
Add multiqc summary of data

BICF/Astrocyte/chipseq_analysis#19 · created Aug 11, 2018 by Venkat Malladi 1.0.0 enhancement
- CLOSED
- 1
- 2
updated Apr 21, 2019
broken link in documentation

BICF/Astrocyte/chipseq_analysis#18 · created Jun 13, 2018 by Spencer Barnes 1.0.0 bug
- CLOSED
- 1
updated Jan 05, 2019
DEA Skip

BICF/Astrocyte/rnaseq#9 · created May 15, 2018 by Jonathan Gesell
- CLOSED
- 1
updated May 16, 2018

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