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  • BICF
  • Issues

  • Open 76
  • Closed 273
  • All 349
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking
  • redirect_outputs
    BICF/Astrocyte/cellranger_mkfastq#3 · created Mar 26, 2019 by Gervaise Henry   enhancement
    • CLOSED
    • 0
    updated Apr 05, 2019
  • Change process selector
    BICF/Astrocyte/cellranger_count#18 · created Mar 25, 2019 by Gervaise Henry   v1.1.0   enhancement
    • CLOSED
    • 1
    • 1
    updated Apr 26, 2019
  • Optimize mkfastq
    BICF/Astrocyte/cellranger_mkfastq#2 · created Mar 24, 2019 by Gervaise Henry   enhancement
    • CLOSED
    • 0
    updated Apr 05, 2019
  • Migrate cellranger_count basics
    BICF/Astrocyte/cellranger_mkfastq#1 · created Mar 24, 2019 by Gervaise Henry   enhancement
    • CLOSED
    • 0
    updated Mar 28, 2019
  • Update Documentation
    BICF/Astrocyte/cellranger_count#17 · created Mar 24, 2019 by Venkat Malladi   Put on Astrocyte Production (1.0.0)   documentation
    • CLOSED
    • 1
    • 1
    updated Mar 25, 2019
  • Move params out of main.nf
    BICF/Astrocyte/cellranger_count#16 · created Mar 12, 2019 by Gervaise Henry   Wait enhancement
    • 2
    updated Apr 13, 2020
  • New folders for all steps
    BICF/Astrocyte/chipseq_analysis#33 · created Mar 12, 2019 by Venkat Malladi   1.0.0
    • CLOSED
    • 1
    • 0
    updated Mar 16, 2019
  • Memory
    BICF/Astrocyte/chipseq_analysis#32 · created Mar 12, 2019 by Venkat Malladi   3.0.0   discussion
    • 0
    updated Jun 23, 2020
  • Add Astrocyte documentation
    BICF/Astrocyte/cellranger_count#15 · created Mar 11, 2019 by Gervaise Henry   Put on Astrocyte Production (1.0.0)   documentation
    • CLOSED
    • 1
    • 0
    updated Mar 24, 2019
  • Develop CI
    BICF/Astrocyte/cellranger_count#14 · created Mar 11, 2019 by Gervaise Henry   v1.2.0   enhancement
    • CLOSED
    • 1
    • 2
    updated Aug 15, 2019
  • skip motif search and diff bind
    BICF/Astrocyte/chipseq_analysis#31 · created Mar 08, 2019 by Holly Ruess   1.0.0   enhancement
    • CLOSED
    • 1
    • 0
    updated Mar 12, 2019
  • Add params from biohpc.config into main.nf
    BICF/Astrocyte/cellranger_count#13 · created Mar 07, 2019 by Gervaise Henry   Put on Astrocyte Production (1.0.0)   bug
    • CLOSED
    • 1
    • 2
    updated Mar 22, 2019
  • Make param.genomeLocation have full path
    BICF/Astrocyte/cellranger_count#12 · created Mar 07, 2019 by Gervaise Henry   Put on Astrocyte Production (1.0.0)   enhancement
    • CLOSED
    • 2
    • 0
    updated Mar 10, 2019
  • Add parameter for 10x kit version
    BICF/Astrocyte/cellranger_count#11 · created Mar 04, 2019 by Gervaise Henry   Put on Astrocyte Production (1.0.0)   enhancement
    • CLOSED
    • 1
    • 0
    updated Mar 05, 2019
  • Add ability to count additional features
    BICF/Astrocyte/cellranger_count#10 · created Mar 04, 2019 by Gervaise Henry   Pending   To Do enhancement
    • 0
    updated Jun 21, 2020
  • Add cellranger references version 3.0.0 as options
    BICF/Astrocyte/cellranger_count#9 · created Mar 04, 2019 by Gervaise Henry   Put on Astrocyte Production (1.0.0)   enhancement
    • CLOSED
    • 1
    • 0
    updated Mar 05, 2019
  • Add cellranger 3.0.2 as option
    BICF/Astrocyte/cellranger_count#8 · created Mar 04, 2019 by Gervaise Henry   Put on Astrocyte Production (1.0.0)   enhancement
    • CLOSED
    • 2
    • 1
    updated Mar 04, 2019
  • Re-direct output
    BICF/Astrocyte/atacseq_analysis#5 · created Feb 20, 2019 by Holly Ruess   Version 2.0   critical
    • CLOSED
    • 0
    updated Jan 02, 2020
  • Fix config file
    BICF/Astrocyte/cellranger_count#7 · created Feb 15, 2019 by Gervaise Henry   Put on Astrocyte Production (1.0.0)   enhancement
    • CLOSED
    • 1
    • 0
    updated Mar 05, 2019
  • xcor.py, --random-source fails if file is too small
    BICF/Astrocyte/chipseq_analysis#30 · created Feb 12, 2019 by Holly Ruess   1.1.0
    • CLOSED
    • 1
    • 0
    updated Mar 15, 2020
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