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BICF
Issues

Open 76
Closed 273
All 349

Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking

redirect_outputs

BICF/Astrocyte/cellranger_mkfastq#3 · created Mar 26, 2019 by Gervaise Henry enhancement
- CLOSED
- 0
updated Apr 05, 2019
Change process selector

BICF/Astrocyte/cellranger_count#18 · created Mar 25, 2019 by Gervaise Henry v1.1.0 enhancement
- CLOSED
- 1
- 1
updated Apr 26, 2019
Optimize mkfastq

BICF/Astrocyte/cellranger_mkfastq#2 · created Mar 24, 2019 by Gervaise Henry enhancement
- CLOSED
- 0
updated Apr 05, 2019
Migrate cellranger_count basics

BICF/Astrocyte/cellranger_mkfastq#1 · created Mar 24, 2019 by Gervaise Henry enhancement
- CLOSED
- 0
updated Mar 28, 2019
Update Documentation

BICF/Astrocyte/cellranger_count#17 · created Mar 24, 2019 by Venkat Malladi Put on Astrocyte Production (1.0.0) documentation
- CLOSED
- 1
- 1
updated Mar 25, 2019
Move params out of main.nf

BICF/Astrocyte/cellranger_count#16 · created Mar 12, 2019 by Gervaise Henry Wait enhancement
- 2
updated Apr 13, 2020
New folders for all steps

BICF/Astrocyte/chipseq_analysis#33 · created Mar 12, 2019 by Venkat Malladi 1.0.0
- CLOSED
- 1
- 0
updated Mar 16, 2019
Memory

BICF/Astrocyte/chipseq_analysis#32 · created Mar 12, 2019 by Venkat Malladi 3.0.0 discussion
- 0
updated Jun 23, 2020
Add Astrocyte documentation

BICF/Astrocyte/cellranger_count#15 · created Mar 11, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) documentation
- CLOSED
- 1
- 0
updated Mar 24, 2019
Develop CI

BICF/Astrocyte/cellranger_count#14 · created Mar 11, 2019 by Gervaise Henry v1.2.0 enhancement
- CLOSED
- 1
- 2
updated Aug 15, 2019
skip motif search and diff bind

BICF/Astrocyte/chipseq_analysis#31 · created Mar 08, 2019 by Holly Ruess 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Mar 12, 2019
Add params from biohpc.config into main.nf

BICF/Astrocyte/cellranger_count#13 · created Mar 07, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) bug
- CLOSED
- 1
- 2
updated Mar 22, 2019
Make param.genomeLocation have full path

BICF/Astrocyte/cellranger_count#12 · created Mar 07, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 2
- 0
updated Mar 10, 2019
Add parameter for 10x kit version

BICF/Astrocyte/cellranger_count#11 · created Mar 04, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 1
- 0
updated Mar 05, 2019
Add ability to count additional features

BICF/Astrocyte/cellranger_count#10 · created Mar 04, 2019 by Gervaise Henry Pending To Do enhancement
- 0
updated Jun 21, 2020
Add cellranger references version 3.0.0 as options

BICF/Astrocyte/cellranger_count#9 · created Mar 04, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 1
- 0
updated Mar 05, 2019
Add cellranger 3.0.2 as option

BICF/Astrocyte/cellranger_count#8 · created Mar 04, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 2
- 1
updated Mar 04, 2019
Re-direct output

BICF/Astrocyte/atacseq_analysis#5 · created Feb 20, 2019 by Holly Ruess Version 2.0 critical
- CLOSED
- 0
updated Jan 02, 2020
Fix config file

BICF/Astrocyte/cellranger_count#7 · created Feb 15, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 1
- 0
updated Mar 05, 2019
xcor.py, --random-source fails if file is too small

BICF/Astrocyte/chipseq_analysis#30 · created Feb 12, 2019 by Holly Ruess 1.1.0
- CLOSED
- 1
- 0
updated Mar 15, 2020

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