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BICF
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BICF
Issues

Open 76
Closed 273
All 349

Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking

update version of nextflow

BICF/Astrocyte/atacseq_analysis#36 · created Feb 26, 2020 by Holly Ruess Version 2.1.0 critical enhancment
- 0
updated Jun 23, 2020
Ref 2020-A not compatible with cellrangers < 4.0.0

BICF/Astrocyte/cellranger_count#53 · created Oct 16, 2020 by Gervaise Henry 3.0.0 To Do bug
- 1
updated Nov 20, 2020
AWSify

BICF/Astrocyte/cellranger_count#39 · created Dec 23, 2019 by Gervaise Henry v2.1.1 Doing enhancement
- CLOSED
- 1
- 0
updated Feb 21, 2020
Fix software versions test

BICF/Astrocyte/chipseq_analysis#37 · created Apr 22, 2019 by Venkat Malladi 1.0.0 bug
- CLOSED
- 1
- 0
updated Apr 22, 2019
Add ulimit to cellranger process

BICF/Astrocyte/cellranger_mkfastq#37 · created Feb 21, 2020 by Gervaise Henry v2.1.5 Doing bug confirmed critical
- CLOSED
- 1
- 1
updated Jun 20, 2020
Fix runners and sigbus error

BICF/Astrocyte/atacseq_analysis#37 · created Mar 31, 2020 by Venkat Malladi
- CLOSED
- 1
- 0
updated May 08, 2020
BUG: thread error on Astrocyte

BICF/Astrocyte/cellranger_count#40 · created Feb 21, 2020 by Gervaise Henry v2.1.1 bug confirmed critical
- CLOSED
- 1
- 0
updated Apr 20, 2020
Ignore dual index

BICF/Astrocyte/cellranger_mkfastq#38 · created Mar 19, 2020 by Gervaise Henry v2.1.5 Doing critical enhancement
- CLOSED
- 1
- 1
updated Jun 20, 2020
Missing modules

BICF/Astrocyte/chipseq_analysis#38 · created Apr 23, 2019 by Venkat Malladi 1.0.0 bug
- CLOSED
- 1
- 0
updated Apr 23, 2019
Add license

BICF/Astrocyte/atacseq_analysis#38 · created Apr 06, 2020 by Venkat Malladi Version 2.0
- CLOSED
- 1
- 0
updated May 07, 2020
Remove unnecessary files from output

BICF/Astrocyte/cellranger_count#43 · created Apr 13, 2020 by Gervaise Henry v2.1.1 Doing enhancement
- CLOSED
- 0
updated Apr 14, 2020
Add base mask

BICF/Astrocyte/cellranger_mkfastq#39 · created Mar 20, 2020 by Gervaise Henry v2.1.5 Doing enhancement
- CLOSED
- 1
- 2
updated Jun 20, 2020
Upgrade to cellranger 5.0.0

BICF/Astrocyte/cellranger_mkfastq#45 · created Nov 20, 2020 by Gervaise Henry 3.0.0 To Do
- 0
updated Nov 20, 2020
Add ability to handle dual index

BICF/Astrocyte/cellranger_mkfastq#44 · created Oct 30, 2020 by Gervaise Henry Pending To Do critical enhancement
- 4
updated Nov 03, 2020
Tests for astrocyte

BICF/Astrocyte/atacseq_analysis#39 · created Jun 11, 2020 by Venkat Malladi
- CLOSED
- 1
- 0
updated Jun 18, 2020
Thread error on BioHPC

BICF/Astrocyte/cellranger_count#44 · created Apr 20, 2020 by Gervaise Henry v2.1.1 Doing To Do bug confirmed critical
- CLOSED
- 1
- 0
updated Apr 20, 2020
Update multiqc version/references report

BICF/Astrocyte/cellranger_mkfastq#40 · created Jun 23, 2020 by Gervaise Henry Pending To Do documentation enhancement
- 0
updated Nov 03, 2020
Add output comments for untarBCL

BICF/Astrocyte/cellranger_mkfastq#43 · created Oct 29, 2020 by Gervaise Henry Pending To Do enhancement
- 1
updated Nov 03, 2020
Astrocyte wrong design file

BICF/Astrocyte/chipseq_analysis#40 · created May 06, 2019 by Venkat Malladi bug
- CLOSED
- 1
- 0
updated May 06, 2019
Astrocyte fixes

BICF/Astrocyte/atacseq_analysis#40 · created Jun 19, 2020 by Venkat Malladi
- CLOSED
- 1
- 0
updated Jun 21, 2020

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