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  • BICF
  • Issues

  • Open 76
  • Closed 273
  • All 349
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking
  • update version of nextflow
    BICF/Astrocyte/atacseq_analysis#36 · created Feb 26, 2020 by Holly Ruess   Version 2.1.0   critical enhancment
    • 0
    updated Jun 23, 2020
  • Ref 2020-A not compatible with cellrangers < 4.0.0
    BICF/Astrocyte/cellranger_count#53 · created Oct 16, 2020 by Gervaise Henry   3.0.0   To Do bug
    • 1
    updated Nov 20, 2020
  • AWSify
    BICF/Astrocyte/cellranger_count#39 · created Dec 23, 2019 by Gervaise Henry   v2.1.1   Doing enhancement
    • CLOSED
    • 1
    • 0
    updated Feb 21, 2020
  • Fix software versions test
    BICF/Astrocyte/chipseq_analysis#37 · created Apr 22, 2019 by Venkat Malladi   1.0.0   bug
    • CLOSED
    • 1
    • 0
    updated Apr 22, 2019
  • Add ulimit to cellranger process
    BICF/Astrocyte/cellranger_mkfastq#37 · created Feb 21, 2020 by Gervaise Henry   v2.1.5   Doing bug confirmed critical
    • CLOSED
    • 1
    • 1
    updated Jun 20, 2020
  • Fix runners and sigbus error
    BICF/Astrocyte/atacseq_analysis#37 · created Mar 31, 2020 by Venkat Malladi
    • CLOSED
    • 1
    • 0
    updated May 08, 2020
  • BUG: thread error on Astrocyte
    BICF/Astrocyte/cellranger_count#40 · created Feb 21, 2020 by Gervaise Henry   v2.1.1   bug confirmed critical
    • CLOSED
    • 1
    • 0
    updated Apr 20, 2020
  • Ignore dual index
    BICF/Astrocyte/cellranger_mkfastq#38 · created Mar 19, 2020 by Gervaise Henry   v2.1.5   Doing critical enhancement
    • CLOSED
    • 1
    • 1
    updated Jun 20, 2020
  • Missing modules
    BICF/Astrocyte/chipseq_analysis#38 · created Apr 23, 2019 by Venkat Malladi   1.0.0   bug
    • CLOSED
    • 1
    • 0
    updated Apr 23, 2019
  • Add license
    BICF/Astrocyte/atacseq_analysis#38 · created Apr 06, 2020 by Venkat Malladi   Version 2.0
    • CLOSED
    • 1
    • 0
    updated May 07, 2020
  • Remove unnecessary files from output
    BICF/Astrocyte/cellranger_count#43 · created Apr 13, 2020 by Gervaise Henry   v2.1.1   Doing enhancement
    • CLOSED
    • 0
    updated Apr 14, 2020
  • Add base mask
    BICF/Astrocyte/cellranger_mkfastq#39 · created Mar 20, 2020 by Gervaise Henry   v2.1.5   Doing enhancement
    • CLOSED
    • 1
    • 2
    updated Jun 20, 2020
  • Upgrade to cellranger 5.0.0
    BICF/Astrocyte/cellranger_mkfastq#45 · created Nov 20, 2020 by Gervaise Henry   3.0.0   To Do
    • 0
    updated Nov 20, 2020
  • Add ability to handle dual index
    BICF/Astrocyte/cellranger_mkfastq#44 · created Oct 30, 2020 by Gervaise Henry   Pending   To Do critical enhancement
    • 4
    updated Nov 03, 2020
  • Tests for astrocyte
    BICF/Astrocyte/atacseq_analysis#39 · created Jun 11, 2020 by Venkat Malladi
    • CLOSED
    • 1
    • 0
    updated Jun 18, 2020
  • Thread error on BioHPC
    BICF/Astrocyte/cellranger_count#44 · created Apr 20, 2020 by Gervaise Henry   v2.1.1   Doing To Do bug confirmed critical
    • CLOSED
    • 1
    • 0
    updated Apr 20, 2020
  • Update multiqc version/references report
    BICF/Astrocyte/cellranger_mkfastq#40 · created Jun 23, 2020 by Gervaise Henry   Pending   To Do documentation enhancement
    • 0
    updated Nov 03, 2020
  • Add output comments for untarBCL
    BICF/Astrocyte/cellranger_mkfastq#43 · created Oct 29, 2020 by Gervaise Henry   Pending   To Do enhancement
    • 1
    updated Nov 03, 2020
  • Astrocyte wrong design file
    BICF/Astrocyte/chipseq_analysis#40 · created May 06, 2019 by Venkat Malladi   bug
    • CLOSED
    • 1
    • 0
    updated May 06, 2019
  • Astrocyte fixes
    BICF/Astrocyte/atacseq_analysis#40 · created Jun 19, 2020 by Venkat Malladi
    • CLOSED
    • 1
    • 0
    updated Jun 21, 2020
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