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BICF
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Blocking
non-biological reads needs renaming
BICF/Astrocyte/sra_pipeline#30
· created
Jul 19, 2021
by
Venkat Malladi
Bug fixes
error correction
0
updated
Jul 19, 2021
nullDataError
BICF/Astrocyte/sra_pipeline#13
· created
Feb 06, 2020
by
Jonathan Gesell
Bug fixes
To Do
0
updated
Apr 20, 2020
Onboarding document fails to provide BICF Redmine URL
onboarding#11
· created
Dec 02, 2019
by
Daniel Moser
CLOSED
1
1
1
updated
Dec 24, 2019
Optimizations
BICF/Astrocyte/chipseq_analysis#39
· created
Apr 23, 2019
by
Jonathan Gesell
3.0.0
discussion
enhancement
0
updated
Jun 23, 2020
Optimize mkfastq
BICF/Astrocyte/cellranger_mkfastq#2
· created
Mar 24, 2019
by
Gervaise Henry
enhancement
CLOSED
0
updated
Apr 05, 2019
Organize output folders
BICF/Astrocyte/cellranger_count#24
· created
Apr 27, 2019
by
Gervaise Henry
v1.1.0
enhancement
CLOSED
1
0
updated
May 03, 2019
Output software versions and methods and references
BICF/Astrocyte/chipseq_analysis#21
· created
Dec 26, 2018
by
Venkat Malladi
1.0.0
enhancement
CLOSED
1
1
updated
Apr 18, 2019
Paired-end
BICF/Astrocyte/sra_pipeline#29
· created
Jul 19, 2021
by
Venkat Malladi
Bug fixes
0
updated
Jul 19, 2021
Paired-end Diffbind peaks gives different answer
BICF/Astrocyte/chipseq_analysis#78
· created
Mar 25, 2020
by
Venkat Malladi
1.1.0
Test
bug
CLOSED
1
0
updated
Apr 20, 2020
Parallelize tests
BICF/Astrocyte/sra_pipeline#22
· created
Jun 16, 2020
by
Jonathan Gesell
Doing
Updates
testing
0
updated
Jun 16, 2020
Pipeline maintaince documentation
onboarding#20
· created
Jun 30, 2020
by
Venkat Malladi
0
updated
Apr 06, 2021
pool and pseudoreplicate
BICF/Astrocyte/atacseq_analysis#4
· created
May 11, 2018
by
Spencer Barnes
Version 2.0
critical
CLOSED
1
updated
Jan 02, 2020
Pool and Pseudoreplication
BICF/Astrocyte/chipseq_analysis#13
· created
Oct 25, 2017
by
Venkat Malladi
1.0.0
enhancement
CLOSED
1
0
updated
Oct 30, 2017
Python Version not in Software Version
BICF/Astrocyte/chipseq_analysis#67
· created
Sep 19, 2019
by
Venkat Malladi
1.1.0
bug
CLOSED
1
0
updated
Mar 15, 2020
Radiation Table
BICF/KCE/kce_etl#1
· created
Jul 09, 2019
by
Venkat Malladi
CLOSED
1
0
updated
Dec 12, 2019
Re-direct output
BICF/Astrocyte/atacseq_analysis#5
· created
Feb 20, 2019
by
Holly Ruess
Version 2.0
critical
CLOSED
0
updated
Jan 02, 2020
redirect_outputs
BICF/Astrocyte/cellranger_mkfastq#3
· created
Mar 26, 2019
by
Gervaise Henry
enhancement
CLOSED
0
updated
Apr 05, 2019
Ref 2020-A not compatible with cellrangers < 4.0.0
BICF/Astrocyte/cellranger_count#53
· created
Oct 16, 2020
by
Gervaise Henry
3.0.0
To Do
bug
1
updated
Nov 20, 2020
reference fasta file has wrong name
BICF/Astrocyte/chipseq_analysis#56
· created
May 24, 2019
by
Holly Ruess
1.0.6
bug
critical
CLOSED
1
2
updated
May 31, 2019
Remove artifacts
BICF/Astrocyte/chipseq_analysis#68
· created
Sep 26, 2019
by
Venkat Malladi
1.1.0
bug
CLOSED
1
0
updated
Mar 15, 2020
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