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  • BICF
  • Issues

  • Open 76
  • Closed 273
  • All 349
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking
  • non-biological reads needs renaming
    BICF/Astrocyte/sra_pipeline#30 · created Jul 19, 2021 by Venkat Malladi   Bug fixes error correction
    • 0
    updated Jul 19, 2021
  • nullDataError
    BICF/Astrocyte/sra_pipeline#13 · created Feb 06, 2020 by Jonathan Gesell   Bug fixes To Do
    • 0
    updated Apr 20, 2020
  • Onboarding document fails to provide BICF Redmine URL
    onboarding#11 · created Dec 02, 2019 by Daniel Moser
    • CLOSED
    • 1
    • 1
    • 1
    updated Dec 24, 2019
  • Optimizations
    BICF/Astrocyte/chipseq_analysis#39 · created Apr 23, 2019 by Jonathan Gesell   3.0.0   discussion enhancement
    • 0
    updated Jun 23, 2020
  • Optimize mkfastq
    BICF/Astrocyte/cellranger_mkfastq#2 · created Mar 24, 2019 by Gervaise Henry   enhancement
    • CLOSED
    • 0
    updated Apr 05, 2019
  • Organize output folders
    BICF/Astrocyte/cellranger_count#24 · created Apr 27, 2019 by Gervaise Henry   v1.1.0   enhancement
    • CLOSED
    • 1
    • 0
    updated May 03, 2019
  • Output software versions and methods and references
    BICF/Astrocyte/chipseq_analysis#21 · created Dec 26, 2018 by Venkat Malladi   1.0.0   enhancement
    • CLOSED
    • 1
    • 1
    updated Apr 18, 2019
  • Paired-end
    BICF/Astrocyte/sra_pipeline#29 · created Jul 19, 2021 by Venkat Malladi   Bug fixes
    • 0
    updated Jul 19, 2021
  • Paired-end Diffbind peaks gives different answer
    BICF/Astrocyte/chipseq_analysis#78 · created Mar 25, 2020 by Venkat Malladi   1.1.0   Test bug
    • CLOSED
    • 1
    • 0
    updated Apr 20, 2020
  • Parallelize tests
    BICF/Astrocyte/sra_pipeline#22 · created Jun 16, 2020 by Jonathan Gesell   Doing Updates testing
    • 0
    updated Jun 16, 2020
  • Pipeline maintaince documentation
    onboarding#20 · created Jun 30, 2020 by Venkat Malladi
    • 0
    updated Apr 06, 2021
  • pool and pseudoreplicate
    BICF/Astrocyte/atacseq_analysis#4 · created May 11, 2018 by Spencer Barnes   Version 2.0   critical
    • CLOSED
    • 1
    updated Jan 02, 2020
  • Pool and Pseudoreplication
    BICF/Astrocyte/chipseq_analysis#13 · created Oct 25, 2017 by Venkat Malladi   1.0.0   enhancement
    • CLOSED
    • 1
    • 0
    updated Oct 30, 2017
  • Python Version not in Software Version
    BICF/Astrocyte/chipseq_analysis#67 · created Sep 19, 2019 by Venkat Malladi   1.1.0   bug
    • CLOSED
    • 1
    • 0
    updated Mar 15, 2020
  • Radiation Table
    BICF/KCE/kce_etl#1 · created Jul 09, 2019 by Venkat Malladi
    • CLOSED
    • 1
    • 0
    updated Dec 12, 2019
  • Re-direct output
    BICF/Astrocyte/atacseq_analysis#5 · created Feb 20, 2019 by Holly Ruess   Version 2.0   critical
    • CLOSED
    • 0
    updated Jan 02, 2020
  • redirect_outputs
    BICF/Astrocyte/cellranger_mkfastq#3 · created Mar 26, 2019 by Gervaise Henry   enhancement
    • CLOSED
    • 0
    updated Apr 05, 2019
  • Ref 2020-A not compatible with cellrangers < 4.0.0
    BICF/Astrocyte/cellranger_count#53 · created Oct 16, 2020 by Gervaise Henry   3.0.0   To Do bug
    • 1
    updated Nov 20, 2020
  • reference fasta file has wrong name
    BICF/Astrocyte/chipseq_analysis#56 · created May 24, 2019 by Holly Ruess   1.0.6   bug critical
    • CLOSED
    • 1
    • 2
    updated May 31, 2019
  • Remove artifacts
    BICF/Astrocyte/chipseq_analysis#68 · created Sep 26, 2019 by Venkat Malladi   1.1.0   bug
    • CLOSED
    • 1
    • 0
    updated Mar 15, 2020
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