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BICF
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BICF
Issues

Open 76
Closed 273
All 349

Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking

Design file - filename with spaces error

BICF/Astrocyte/cellranger_mkfastq#31 · created Aug 27, 2019 by Gervaise Henry v2.1.5 bug confirmed
- CLOSED
- 2
- 0
updated Sep 03, 2019
Blacklist of regions

BICF/Astrocyte/atacseq_analysis#31 · created Jan 09, 2020 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 1
- 0
updated Jun 09, 2020
Sample ID for design file 3 of 3 tasks completed

BICF/Astrocyte/cellranger_mkfastq#32 · created Aug 27, 2019 by Gervaise Henry v2.1.5 documentation
- CLOSED
- 1
- 0
updated Sep 03, 2019
Annotate peaks

BICF/Astrocyte/atacseq_analysis#32 · created Jan 09, 2020 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 1
- 0
updated Jun 11, 2020
New folders for all steps

BICF/Astrocyte/chipseq_analysis#33 · created Mar 12, 2019 by Venkat Malladi 1.0.0
- CLOSED
- 1
- 0
updated Mar 16, 2019
Untar folder structure

BICF/Astrocyte/cellranger_mkfastq#33 · created Aug 27, 2019 by Gervaise Henry v2.1.5 enhancement
- CLOSED
- 2
updated Sep 11, 2019
Motif search in peaks

BICF/Astrocyte/atacseq_analysis#33 · created Jan 09, 2020 by Holly Ruess Version 2.1.0 enhancment
- 0
updated Jun 23, 2020
MultiQC error

BICF/Astrocyte/cellranger_count#36 · created Aug 10, 2019 by Gervaise Henry v1.2.0 bug
- CLOSED
- 1
- 0
updated Aug 13, 2019
Fix tests for software versions

BICF/Astrocyte/chipseq_analysis#34 · created Apr 19, 2019 by Venkat Malladi 1.0.0 bug
- CLOSED
- 1
- 0
updated Apr 20, 2019
add checks to checkDesign process

BICF/Astrocyte/cellranger_mkfastq#34 · created Sep 11, 2019 by Spencer Barnes v2.1.5 bug enhancement
- CLOSED
- 1
- 2
updated Nov 07, 2019
Diff Peak analysis

BICF/Astrocyte/atacseq_analysis#34 · created Jan 09, 2020 by Holly Ruess Version 2.1.0 enhancment
- 0
updated Jun 23, 2020
Check for space in design file error

BICF/Astrocyte/cellranger_count#37 · created Sep 03, 2019 by Gervaise Henry v2.1.1 bug
- CLOSED
- 1
- 1
updated Nov 07, 2019
Fix astrocyte run

BICF/Astrocyte/chipseq_analysis#35 · created Apr 22, 2019 by Venkat Malladi 1.0.0 bug
- CLOSED
- 2
- 0
updated Apr 22, 2019
Cleanup process outputs

BICF/Astrocyte/cellranger_mkfastq#35 · created Nov 07, 2019 by Gervaise Henry v2.1.5 enhancement
- CLOSED
- 2
- 0
updated Nov 08, 2019
Change to 256 only if job fails

BICF/Astrocyte/atacseq_analysis#35 · created Jan 09, 2020 by Holly Ruess Version 2.1.0 enhancment
- 0
updated Jun 23, 2020
Add 3':5' param

BICF/Astrocyte/cellranger_count#38 · created Dec 05, 2019 by Gervaise Henry v2.1.1 Doing critical enhancement
- CLOSED
- 1
- 0
updated Apr 14, 2020
Containerize

BICF/Astrocyte/cellranger_count#41 · created Apr 13, 2020 by Gervaise Henry v2.1.1 Doing enhancement
- CLOSED
- 1
- 2
updated Apr 15, 2020
Update params to current standards

BICF/Astrocyte/cellranger_count#42 · created Apr 13, 2020 by Gervaise Henry v2.1.1 Doing enhancement
- CLOSED
- 1
- 0
updated Apr 15, 2020
Update Astrocyte documentation and errors

BICF/Astrocyte/chipseq_analysis#36 · created Apr 22, 2019 by Venkat Malladi 1.0.0 bug
- CLOSED
- 1
- 0
updated Apr 22, 2019
AWSify

BICF/Astrocyte/cellranger_mkfastq#36 · created Dec 23, 2019 by Gervaise Henry v2.1.5
- CLOSED
- 0
updated Jan 01, 2020

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