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  • BICF
  • Issues

  • Open 76
  • Closed 273
  • All 349
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking
  • Design file - filename with spaces error
    BICF/Astrocyte/cellranger_mkfastq#31 · created Aug 27, 2019 by Gervaise Henry   v2.1.5   bug confirmed
    • CLOSED
    • 2
    • 0
    updated Sep 03, 2019
  • Blacklist of regions
    BICF/Astrocyte/atacseq_analysis#31 · created Jan 09, 2020 by Holly Ruess   Version 2.0   enhancment
    • CLOSED
    • 1
    • 0
    updated Jun 09, 2020
  • Sample ID for design file   3 of 3 tasks completed
    BICF/Astrocyte/cellranger_mkfastq#32 · created Aug 27, 2019 by Gervaise Henry   v2.1.5   documentation
    • CLOSED
    • 1
    • 0
    updated Sep 03, 2019
  • Annotate peaks
    BICF/Astrocyte/atacseq_analysis#32 · created Jan 09, 2020 by Holly Ruess   Version 2.0   enhancment
    • CLOSED
    • 1
    • 0
    updated Jun 11, 2020
  • New folders for all steps
    BICF/Astrocyte/chipseq_analysis#33 · created Mar 12, 2019 by Venkat Malladi   1.0.0
    • CLOSED
    • 1
    • 0
    updated Mar 16, 2019
  • Untar folder structure
    BICF/Astrocyte/cellranger_mkfastq#33 · created Aug 27, 2019 by Gervaise Henry   v2.1.5   enhancement
    • CLOSED
    • 2
    updated Sep 11, 2019
  • Motif search in peaks
    BICF/Astrocyte/atacseq_analysis#33 · created Jan 09, 2020 by Holly Ruess   Version 2.1.0   enhancment
    • 0
    updated Jun 23, 2020
  • MultiQC error
    BICF/Astrocyte/cellranger_count#36 · created Aug 10, 2019 by Gervaise Henry   v1.2.0   bug
    • CLOSED
    • 1
    • 0
    updated Aug 13, 2019
  • Fix tests for software versions
    BICF/Astrocyte/chipseq_analysis#34 · created Apr 19, 2019 by Venkat Malladi   1.0.0   bug
    • CLOSED
    • 1
    • 0
    updated Apr 20, 2019
  • add checks to checkDesign process
    BICF/Astrocyte/cellranger_mkfastq#34 · created Sep 11, 2019 by Spencer Barnes   v2.1.5   bug enhancement
    • CLOSED
    • 1
    • 2
    updated Nov 07, 2019
  • Diff Peak analysis
    BICF/Astrocyte/atacseq_analysis#34 · created Jan 09, 2020 by Holly Ruess   Version 2.1.0   enhancment
    • 0
    updated Jun 23, 2020
  • Check for space in design file error
    BICF/Astrocyte/cellranger_count#37 · created Sep 03, 2019 by Gervaise Henry   v2.1.1   bug
    • CLOSED
    • 1
    • 1
    updated Nov 07, 2019
  • Fix astrocyte run
    BICF/Astrocyte/chipseq_analysis#35 · created Apr 22, 2019 by Venkat Malladi   1.0.0   bug
    • CLOSED
    • 2
    • 0
    updated Apr 22, 2019
  • Cleanup process outputs
    BICF/Astrocyte/cellranger_mkfastq#35 · created Nov 07, 2019 by Gervaise Henry   v2.1.5   enhancement
    • CLOSED
    • 2
    • 0
    updated Nov 08, 2019
  • Change to 256 only if job fails
    BICF/Astrocyte/atacseq_analysis#35 · created Jan 09, 2020 by Holly Ruess   Version 2.1.0   enhancment
    • 0
    updated Jun 23, 2020
  • Add 3':5' param
    BICF/Astrocyte/cellranger_count#38 · created Dec 05, 2019 by Gervaise Henry   v2.1.1   Doing critical enhancement
    • CLOSED
    • 1
    • 0
    updated Apr 14, 2020
  • Containerize
    BICF/Astrocyte/cellranger_count#41 · created Apr 13, 2020 by Gervaise Henry   v2.1.1   Doing enhancement
    • CLOSED
    • 1
    • 2
    updated Apr 15, 2020
  • Update params to current standards
    BICF/Astrocyte/cellranger_count#42 · created Apr 13, 2020 by Gervaise Henry   v2.1.1   Doing enhancement
    • CLOSED
    • 1
    • 0
    updated Apr 15, 2020
  • Update Astrocyte documentation and errors
    BICF/Astrocyte/chipseq_analysis#36 · created Apr 22, 2019 by Venkat Malladi   1.0.0   bug
    • CLOSED
    • 1
    • 0
    updated Apr 22, 2019
  • AWSify
    BICF/Astrocyte/cellranger_mkfastq#36 · created Dec 23, 2019 by Gervaise Henry   v2.1.5
    • CLOSED
    • 0
    updated Jan 01, 2020
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