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BICF
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BICF
Issues

Open 76
Closed 273
All 349

Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking

Astrocyte wrong design file

BICF/Astrocyte/chipseq_analysis#40 · created May 06, 2019 by Venkat Malladi bug
- CLOSED
- 1
- 0
updated May 06, 2019
Remove spaces in input folders and files

BICF/Astrocyte/cellranger_mkfastq#21 · created May 03, 2019 by Gervaise Henry v1.2.0 enhancement
- CLOSED
- 1
updated May 24, 2019
Correct SRA Download procedure

BICF/Astrocyte/sra_pipeline#3 · created May 03, 2019 by Jonathan Gesell error correction
- CLOSED
- 2
- 0
updated May 10, 2019
Add in Astrocyte Support

BICF/Astrocyte/sra_pipeline#2 · created May 03, 2019 by Venkat Malladi
- CLOSED
- 4
- 0
updated May 29, 2019
Add testing scripts

BICF/Astrocyte/sra_pipeline#1 · created May 03, 2019 by Jonathan Gesell testing
- CLOSED
- 1
- 0
updated May 03, 2019
An error in 'trimgalore.sh'

BICF/Astrocyte/rnaseq#13 · created May 02, 2019 by Jeon Lee
- 0
updated May 02, 2019
Update script to incorrpoarte chagnes from ChiP_seq pipeline

BICF/Astrocyte/atacseq_analysis#10 · created May 02, 2019 by Venkat Malladi Version 1.0 critical
- CLOSED
- 1
updated Dec 03, 2019
Add in references and version used in script

BICF/Astrocyte/atacseq_analysis#9 · created May 02, 2019 by Venkat Malladi Version 2.0 critical
- CLOSED
- 1
updated May 28, 2020
Make ATAC-seq pipeline generalizibe for Open Chromatin

BICF/Astrocyte/atacseq_analysis#8 · created May 02, 2019 by Venkat Malladi Version 1.0 enhancment
- CLOSED
- 1
updated Dec 03, 2019
Shift is incorrect for ATAC-seq

BICF/Astrocyte/atacseq_analysis#7 · created May 02, 2019 by Venkat Malladi Version 2.0 bug
- CLOSED
- 1
updated Jan 06, 2020
Fix dea.R

BICF/Astrocyte/rnaseq#12 · created Apr 29, 2019 by Jonathan Gesell
- 0
updated Apr 29, 2019
Add Jon's ORCID

onboarding#3 · created Apr 29, 2019 by Venkat Malladi
- CLOSED
- 1
- 0
updated Apr 29, 2019
Organize output folders

BICF/Astrocyte/cellranger_count#24 · created Apr 27, 2019 by Gervaise Henry v1.1.0 enhancement
- CLOSED
- 1
- 0
updated May 03, 2019
CI: mkdir ln forcing

BICF/Astrocyte/cellranger_count#23 · created Apr 27, 2019 by Gervaise Henry v1.1.0 enhancement
- CLOSED
- 1
- 0
updated Aug 15, 2019
Document Backups

onboarding#2 · created Apr 26, 2019 by Venkat Malladi
- CLOSED
- 1
- 0
updated Apr 26, 2019
Make changelog

BICF/Astrocyte/cellranger_count#22 · created Apr 26, 2019 by Gervaise Henry v1.1.0 documentation
- CLOSED
- 1
- 0
updated Aug 15, 2019
Change regex in astrocyte yaml

BICF/Astrocyte/cellranger_count#21 · created Apr 26, 2019 by Gervaise Henry v1.1.0 enhancement
- CLOSED
- 1
- 0
updated Aug 15, 2019
CI: Make Astrocyte test only one for tag

BICF/Astrocyte/cellranger_mkfastq#20 · created Apr 26, 2019 by Gervaise Henry v1.2.0 enhancement
- CLOSED
- 1
- 0
updated May 24, 2019
Move params out of main.nf

BICF/Astrocyte/cellranger_mkfastq#19 · created Apr 26, 2019 by Gervaise Henry Wait enhancement
- 1
updated Apr 26, 2019
Add DOI

BICF/Astrocyte/cellranger_count#20 · created Apr 26, 2019 by Gervaise Henry v1.1.0 Apr 29, 2019 documentation
- CLOSED
- 1
- 1
updated Aug 15, 2019

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