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BICF
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BICF
Issues

Open 76
Closed 273
All 349

Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking

New folders for all steps

BICF/Astrocyte/chipseq_analysis#33 · created Mar 12, 2019 by Venkat Malladi 1.0.0
- CLOSED
- 1
- 0
updated Mar 16, 2019
Add Astrocyte documentation

BICF/Astrocyte/cellranger_count#15 · created Mar 11, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) documentation
- CLOSED
- 1
- 0
updated Mar 24, 2019
Develop CI

BICF/Astrocyte/cellranger_count#14 · created Mar 11, 2019 by Gervaise Henry v1.2.0 enhancement
- CLOSED
- 1
- 2
updated Aug 15, 2019
skip motif search and diff bind

BICF/Astrocyte/chipseq_analysis#31 · created Mar 08, 2019 by Holly Ruess 1.0.0 enhancement
- CLOSED
- 1
- 0
updated Mar 12, 2019
Add params from biohpc.config into main.nf

BICF/Astrocyte/cellranger_count#13 · created Mar 07, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) bug
- CLOSED
- 1
- 2
updated Mar 22, 2019
Make param.genomeLocation have full path

BICF/Astrocyte/cellranger_count#12 · created Mar 07, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 2
- 0
updated Mar 10, 2019
Add parameter for 10x kit version

BICF/Astrocyte/cellranger_count#11 · created Mar 04, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 1
- 0
updated Mar 05, 2019
Add cellranger references version 3.0.0 as options

BICF/Astrocyte/cellranger_count#9 · created Mar 04, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 1
- 0
updated Mar 05, 2019
Add cellranger 3.0.2 as option

BICF/Astrocyte/cellranger_count#8 · created Mar 04, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 2
- 1
updated Mar 04, 2019
Re-direct output

BICF/Astrocyte/atacseq_analysis#5 · created Feb 20, 2019 by Holly Ruess Version 2.0 critical
- CLOSED
- 0
updated Jan 02, 2020
Fix config file

BICF/Astrocyte/cellranger_count#7 · created Feb 15, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 1
- 0
updated Mar 05, 2019
xcor.py, --random-source fails if file is too small

BICF/Astrocyte/chipseq_analysis#30 · created Feb 12, 2019 by Holly Ruess 1.1.0
- CLOSED
- 1
- 0
updated Mar 15, 2020
Fix design file overwrite

BICF/Astrocyte/cellranger_count#6 · created Feb 07, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) bug
- CLOSED
- 0
updated Mar 05, 2019
Add MultiQC

BICF/Astrocyte/cellranger_count#5 · created Feb 06, 2019 by Gervaise Henry v1.1.0 enhancement
- CLOSED
- 3
- 1
updated Aug 15, 2019
Create output directory option

BICF/Astrocyte/cellranger_count#4 · created Feb 06, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 1
- 0
updated Apr 27, 2019
Make instructions

BICF/Astrocyte/cellranger_count#3 · created Feb 06, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) documentation
- CLOSED
- 1
- 0
updated Apr 27, 2019
Remove reference genome full folder

BICF/Astrocyte/cellranger_count#2 · created Feb 06, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 2
- 1
updated Apr 27, 2019
Add cellranger v3.0.1

BICF/Astrocyte/cellranger_count#1 · created Feb 06, 2019 by Gervaise Henry Put on Astrocyte Production (1.0.0) enhancement
- CLOSED
- 2
- 0
updated Feb 07, 2019
add plotProfile

BICF/Astrocyte/chipseq_analysis#29 · created Jan 23, 2019 by Holly Ruess 1.1.0 enhancement
- CLOSED
- 1
- 0
updated Mar 15, 2020
Last 3 steps don't go into user defined output directory

BICF/Astrocyte/chipseq_analysis#28 · created Jan 23, 2019 by Holly Ruess 1.0.0 bug
- CLOSED
- 0
updated Apr 03, 2019

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