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  • BICF
  • Issues

  • Open 76
  • Closed 273
  • All 349
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking
  • map reads fails to make bam files for long reads
    BICF/Astrocyte/atacseq_analysis#43 · created Jul 28, 2020 by Venkat Malladi   bug critical
    • CLOSED
    • 1
    • 1
    updated Jul 29, 2020
  • Update outside collaboration fee structure
    onboarding#21 · created Jul 14, 2020 by Venkat Malladi
    • CLOSED
    • 1
    • 0
    updated Jul 14, 2020
  • Gender to sex
    BICF/KCE/kce_etl#29 · created Jul 01, 2020 by Venkat Malladi
    • CLOSED
    • 1
    updated Jul 01, 2020
  • Pipeline maintaince documentation
    onboarding#20 · created Jun 30, 2020 by Venkat Malladi
    • 0
    updated Apr 06, 2021
  • Add test for astrocyte specific run of pipline   3 of 3 tasks completed
    BICF/Astrocyte/cellranger_mkfastq#41 · created Jun 26, 2020 by Venkat Malladi   To Do bug
    • 1
    • 0
    updated Oct 30, 2020
  • Add test for astrocyte 0.3.1   0 of 3 tasks completed
    BICF/Astrocyte/cellranger_count#49 · created Jun 26, 2020 by Venkat Malladi   Wait bug
    • 0
    updated Aug 02, 2020
  • update test for astrocyte 0.3.1
    BICF/Astrocyte/sra_pipeline#25 · created Jun 26, 2020 by Venkat Malladi
    • 0
    updated Jun 26, 2020
  • Track chip-seq usage
    BICF/Astrocyte/chipseq_analysis#84 · created Jun 19, 2020 by Venkat Malladi
    • CLOSED
    • 1
    • 1
    updated Jul 01, 2020
  • Astrocyte fixes
    BICF/Astrocyte/atacseq_analysis#40 · created Jun 19, 2020 by Venkat Malladi
    • CLOSED
    • 1
    • 0
    updated Jun 21, 2020
  • Update doi in Readme
    BICF/Astrocyte/sra_pipeline#23 · created Jun 17, 2020 by Venkat Malladi
    • CLOSED
    • 1
    • 0
    updated Aug 15, 2020
  • Parallelize tests
    BICF/Astrocyte/sra_pipeline#22 · created Jun 16, 2020 by Jonathan Gesell   Doing Updates testing
    • 0
    updated Jun 16, 2020
  • Tests for astrocyte
    BICF/Astrocyte/atacseq_analysis#39 · created Jun 11, 2020 by Venkat Malladi
    • CLOSED
    • 1
    • 0
    updated Jun 18, 2020
  • Add badges
    BICF/Astrocyte/sra_pipeline#21 · created Jun 02, 2020 by Venkat Malladi
    • CLOSED
    • 1
    • 0
    updated Jun 17, 2020
  • BUG: SRX not working
    BICF/Astrocyte/sra_pipeline#20 · created May 10, 2020 by Gervaise Henry
    • CLOSED
    • 2
    updated May 10, 2020
  • Multiqc failure
    BICF/Astrocyte/cellranger_count#45 · created Apr 26, 2020 by Gervaise Henry   To Do bug
    • CLOSED
    • 1
    • 0
    updated Apr 26, 2020
  • Comparison Script
    BICF/KCE/kce_etl#28 · created Apr 25, 2020 by Venkat Malladi
    • 0
    updated Apr 25, 2020
  • New Beaker code
    BICF/KCE/kce_etl#27 · created Apr 25, 2020 by Venkat Malladi
    • 0
    updated Apr 25, 2020
  • Git CI stall solution update
    onboarding#19 · created Apr 13, 2020 by Gervaise Henry
    • CLOSED
    • 1
    • 0
    updated Apr 14, 2020
  • Update Astrocyte configuration   4 of 8 tasks completed
    BICF/Astrocyte/sra_pipeline#18 · created Apr 04, 2020 by Venkat Malladi
    • CLOSED
    • 1
    • 0
    updated Jun 01, 2020
  • Need Zenodo registration
    BICF/Astrocyte/sra_pipeline#17 · created Apr 03, 2020 by Gervaise Henry
    • CLOSED
    • 1
    • 2
    updated Apr 20, 2020
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